| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5894 |
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| Symbol | |
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| ID | 6277590 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 2112831 |
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| End bp | 2114900 |
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| Gene Length | 2070 bp |
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| Protein Length | 689 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642616957 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001889600 |
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| Protein GI | 187920568 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.528175 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAGCT CATACAATTT TTGGCTGGTC ACCATCTCAC TCGTCGTCGC GACGTTGGCG
TCGTACACGG CGCTCGACCT GACCGGCCGC ATTTTCCTGC TGGCGTCGGC GCGGCTGCGA
CACGCCTGGC GGCTGGGCGG CGCCGCCGCG CTCGGCGTCG GCATCTGGTC GATGCACTTC
ATCGCGATGC TCGCCTTTTC GCTGCCGATT CCGCTCGGCT ACGACTTTGC GACGACCGCC
GCGTCGCTCG GGCTCGCGAT CGGCGCCTCC TATCTGGCCC TGTACGTCAC GACTCTGCAG
CGGCTCACGC CGGGCCGCCT GCTGGCGGGT GGCGTGCTGA TGGGCTTCGG CATTGCCGGC
ATGCACTACA CCGGCATGGC GGCCTTGCAG ATGGCGCCAG GCATCCGCTA TCAGCCGGGG
TGGTTCGCGG CCTCGCTCGC GATCGCCATC GGCGCATCGA CCGCCGCGTT GTGGATGGCC
CGCGCGCTCA GCAACGACGG CGCGCGCCAC GTCGTGCGTA AGCGTCTGGG GGCGGCGCTC
GTGATGGGCG TGGCGATCAG CGGCATGCAT TACACGGCCA TGGCCGCCGC CGACTTTGTG
CCGGGCGCCA TCTGCGGCGC GGCCAAAGGC GTGAACGCCA CGTGGCTCGC GACCTCCGTG
ATCCTGCTCA CCTTTGCCAT TCTGACGGTC ACGCTGATGC TGTCGCGCTT CGACGCGCGC
AACGCCTTGC TGATCGGCGC GGTGTCCAGG CTGAACGGCC AGATCGTGCG GCTCGCCACG
CTCGACACAC TGACCGGCCT GCCGAACCGC AGCACGCTGA CCGACCGCAT CGAGCGCGCG
ATCCTCAGCG CGCGGCGGCA GCGCACGCTG TTCGCGATCC TCTTCATGGA CCTCGACGGC
TTCAAGACCA TCAACGATTC GCTCGGTCAC TCGGTCGGCG ATCAGGTTCT GACGGCGTTC
GCGCAGCGCC TGCTGCAATG TGTACGCGAG ACCGACACCG TCGCGCGGCT GGGCGGCGAC
GAATTCGTGG TGCTGGCCGA AAACCTCGGT TCGCGCGAAG ACGCCAGCGC GCTCGCGGAA
GGCGTGCTCG AGCGCATGCG CCTCGGCGTG TGGACCGACT CGCAGCCGCT GCAGGTCATG
CCGAGCATCG GCATCGCCCT CTATCCGCAC GACGGCGACT CCGTCGAGAC GCTGCTCAAG
CACGCCGACG CGGCCATGTA CGAGGCCAAA CGCGCGGGCC GCAGCACTTA TCGCTTCTTC
GAGCGCAGCA TGAACGAGGC CGCCACGCGC ACGCTGCAGA TCCAGAACGC GTTGCACGAC
GCGCTCGCCG CCGGCCATTT CTCGCTGCAC TTCCAGCCCA AGTTTCACGG CAACGGCAAC
TCGCTGGCGG GCGCCGAAGC GCTGATCCGT TTGCATCACC CGCAACTCGG CGCGCTGACG
CCGCTCGAGT TCATTCCGAT CGCCGAGCGC TCGGGGCAGA TCGTGCAGAT CGGCTACTGG
GTCGTGCGCG AAACCTGCCG GCAGATTCGC CGATGGGTCT CGCAGGGGCT GCCGGCGATG
AAAGTGGCGA TCAATCTGTC GCCGCGCCAG TTGCTGCAGC CGAACCTCGT CGCGAGCATG
CTCGCGATCG TCGAGGCCGA AGGCGTGGCC TGCGAGCAGA TCATGTTCGA GATCACCGAA
ACCGTGGCCA TGCAGGACGC GCCCAAGACC ATCGAAATGA TCCGCGAATT CCAGGCAAGC
GGCTTCGAGA TCGCGATCGA CGACTTCGGC ACCGGCTATT CGAGCCTCGC CTATCTGCAG
CGTTTTCGCG TCAAACAACT GAAGATCGAC CGCTTCTTCA CCAACGGCCT CGACGCGCAC
GGCCCGGAAG GCAGCGCGAT CGTGTCCGCG ATCATCGCCC TTGCGCATTC GCTGGAAATG
GATGTGGTGG CCGAGGGCGT CGAAACCGAA TCGCAACTCG GCATGCTCAA GACGATGCGG
TGCGACGAGA TGCAGGGTTT CCTGCTCGGC AAGCCGCTCG GCGCCGACGA CTTCGCCAAC
CTGCTGCGCG AGAGAATGGT GGCCGCGTAA
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| Protein sequence | MQSSYNFWLV TISLVVATLA SYTALDLTGR IFLLASARLR HAWRLGGAAA LGVGIWSMHF
IAMLAFSLPI PLGYDFATTA ASLGLAIGAS YLALYVTTLQ RLTPGRLLAG GVLMGFGIAG
MHYTGMAALQ MAPGIRYQPG WFAASLAIAI GASTAALWMA RALSNDGARH VVRKRLGAAL
VMGVAISGMH YTAMAAADFV PGAICGAAKG VNATWLATSV ILLTFAILTV TLMLSRFDAR
NALLIGAVSR LNGQIVRLAT LDTLTGLPNR STLTDRIERA ILSARRQRTL FAILFMDLDG
FKTINDSLGH SVGDQVLTAF AQRLLQCVRE TDTVARLGGD EFVVLAENLG SREDASALAE
GVLERMRLGV WTDSQPLQVM PSIGIALYPH DGDSVETLLK HADAAMYEAK RAGRSTYRFF
ERSMNEAATR TLQIQNALHD ALAAGHFSLH FQPKFHGNGN SLAGAEALIR LHHPQLGALT
PLEFIPIAER SGQIVQIGYW VVRETCRQIR RWVSQGLPAM KVAINLSPRQ LLQPNLVASM
LAIVEAEGVA CEQIMFEITE TVAMQDAPKT IEMIREFQAS GFEIAIDDFG TGYSSLAYLQ
RFRVKQLKID RFFTNGLDAH GPEGSAIVSA IIALAHSLEM DVVAEGVETE SQLGMLKTMR
CDEMQGFLLG KPLGADDFAN LLRERMVAA
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