| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5409 |
|---|
| Symbol | |
|---|
| ID | 6278208 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 1601994 |
|---|
| End bp | 1602881 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642616494 |
|---|
| Product | Procollagen-proline dioxygenase |
|---|
| Protein accession | YP_001889137 |
|---|
| Protein GI | 187920106 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.23734 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.673312 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGTAG TGGATGCCGC ATGGGAAGAG TGGCTGAGCA GCAACGTGGC GCGCGGCTGT
AGTCCCGATT CGATGGTCGA CGCCATGGTG CAAGCCGGTT TTGCCACCGA CGCCGCGCGC
GCAGCCGTGC ACAGCACTTT CGGGCAAGAC CCGGCTAAAG CGGCAAATCC GGCCTTTGCC
GCGGCGGCCG CGACCGAAGC GGCGCTCGCC AAAGCCGCGC CGCAAATCTA CCAATACGAC
GATCCGCCCG TCGCGCGCGG CAACGTGATC CGCGCGCACG ATCGCGACGT GCGTGTGCTG
GTGCGTTGCG AGCGTCCCCA GGTGATCGTG TTCGGCGACG TGTTGTCTCC GGACGAATGC
GCCGAGATGA TCGAGCGTTC GCGTCATCGG CTGAAGCGCT CCACCACGGT CAATCCGGAG
ACCGGCAAGG AAGACGTGAT CCGCAATCGC ACCAGCGAAG GCATCTGGTA TCAGCGCGGC
GAAGATGCCT TCATCGAACG GATGGATCGG CGCATTTCGA GCCTGATGAA CTGGCCGGTC
GAAAACGGCG AAGGGCTGCA GATTCTGCAC TACGGCACGA CCGGCGAATA CCGCCCGCAT
TTCGACTATT TCCCGCCTGA TCAACCCGGC AGCGCGGTGC ACACCGCGCA GGGCGGCCAG
CGCGTCGCTA CGTTGGTGAT CTACCTGAAC GATGTGCCGG ACGGCGGCGA AACCATCTTC
CCCGAAGCGG GCATATCGGT CGCGGCGAGA CAGGGTGGGG CGGTGTATTT CCGTTATATG
AACGGCCAGC GCCAACTCGA TCCACTGACC TTGCACGGCG GTGCGCCGGT ACTCGGCGGC
GACAAATGGA TCATGACGAA GTGGATGCGC GAACGCGCTT ACGGCTGA
|
|---|
| Protein sequence | MPVVDAAWEE WLSSNVARGC SPDSMVDAMV QAGFATDAAR AAVHSTFGQD PAKAANPAFA
AAAATEAALA KAAPQIYQYD DPPVARGNVI RAHDRDVRVL VRCERPQVIV FGDVLSPDEC
AEMIERSRHR LKRSTTVNPE TGKEDVIRNR TSEGIWYQRG EDAFIERMDR RISSLMNWPV
ENGEGLQILH YGTTGEYRPH FDYFPPDQPG SAVHTAQGGQ RVATLVIYLN DVPDGGETIF
PEAGISVAAR QGGAVYFRYM NGQRQLDPLT LHGGAPVLGG DKWIMTKWMR ERAYG
|
|---|
| |