| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5287 |
|---|
| Symbol | |
|---|
| ID | 6278090 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 1465069 |
|---|
| End bp | 1467102 |
|---|
| Gene Length | 2034 bp |
|---|
| Protein Length | 677 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642616373 |
|---|
| Product | protein of unknown function UPF0118 |
|---|
| Protein accession | YP_001889016 |
|---|
| Protein GI | 187919985 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0628] Predicted permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGACA TCCCCGAACC GCGCGGCGTG AGACCGGCCA CGCACATTCG AGCGCCCGCC
ACGGCCTTCA GCCTGGACAG CCTGATCTCG CTCGCGGTGG GCGTGACGGT GGTCGCTTGC
CTGTACTTCG CGAGCGCCGT ACTGATCCCG ATCACGCTCG CCATCCTGCT CAGCTTTCTT
GTCGCGCCGC TCGCCAATGC GTTGATGCGT TTGCGGCTTG GGCATGTGGC GTCGGTGTTC
GCCGCCGTGG TGATCTCGGT ATCGGTGATC GGGATGCTCG GCGCGGTGAT TGCCACGCAA
CTGACCGATC TTGCGGCCGG CATGCCACGT TATCAGGCCA CCATCGAGCA GAAGATGGAG
ACGGCGCACA GTTTGACCAT CGGCAAACTG AACCGCTTTG CGAGTGCGGC AGGCCAAGCG
CTGCAGCGCG CGACGGTCGA GCCGCCGCAA CCGGCGCCTC AGCGTGGCCC GGCCTCTCGC
GACAGTGCGC GTTCGACAGC CAGCGAGCCC GCTGCCGTGC CCGTCGAAGT GCGCGAGCCG
GTGCCGACGC CATTCGAACT TGCGAGACGC GTATTGTCGC CGGCGATCAG TCCGCTTGAA
ACGGCGTTTA TCGTTTTCGT CGTGATGGTG GTGATCCTGT TGCAACGCGA CGATCTACGC
GACCGCGCCA TCCGTCTGTT CGGCTCGCGC GACCTGCACC GCACGACCAC GGTGATGGAC
GAAGCCGCGC GGCGTTTGAG CCGTTACTTC GTTTCGCAAC TCGGGCTGAA TGCGGGCGTC
GGCGTGATCA TCGGCACGGG CCTGTTCATG ATCGGTGTGC CGAGTCCGAT TCTGTGGGGC
ATTCTCGCGG CGCTGCTGCG GCTCGTGCCT TACGTCGGCA TATGGATCTC GGCCACGCTG
GCCACCGCGC TCGCCGCCGC GGTGAGTCCG GGCTGGACAA TGGCGATCTG GTCGCTGGCG
CTGTTCGTCA GCGTGGAAGT ACTAGTCGGG CAGATCGTCG AGCCGCTGCT GTATGGACGC
AGCACGGGGC TCTCGCCGTT TTCGGTCGTG GTGGCCGCGA TTTTCTGGAG CTGGATCTGG
GGGCCGATAG GCTTGATTCT GTCCACGCCG TTGACGCTTT GTTTGCTCGT ACTCGGCCGG
CATGTGCGGC GCCTGGAGTT TCTCGACGTG CTGCTGGGCG ACCAGCCCGC GCTGACGCCC
GTGGAAAACT TTTATCAGCG TGCGTTGGCG GGCGACCCGG ACGAAGCGAT CGAGCAAGCA
GAACTGCTGC TGCGCGAGCG CTCCTTGTCC TCGTACTACG ACGAGGTCGC GATCAAGGGC
CTGCAGCTCG CGGCCAACGA CGTAATGCGC GGGAGCGTCA CGGCGACGCA GCTTGCGCGC
ATCGAGGCGA CGACGAACGA CCTCGTGGAC GGCCTCGACG GTTATGACGA CCGCGAGCCG
GTCACCTCTG CCGCGAACGA AAACTGGAGT GCGGCAGGGC CGTTGTCGCC TGCAGCTTCC
GACGAATCCA ATGTTGCACG AACTGAAGCA GCGAATCCGC CGTCCGTTAC GTCAGGCCAT
TCGGAAGAAA CTCATGCAAC GAACCAGTCG CCGGTCGCTG CGAGCAGCCG CGTGCTGTGC
ATTCCCGGAC GCGGCCCGCT CGACGCATTA GCGACCACTA TCCTGTTGCA GTTGCTAGCC
AAGCACGGAT TTGCGTCACG TGCGTTGCCG CATGAGGCCG CATCGCGCGC GTCGATCGAT
CAACTCGACG CGGACGATGT CGGCATCGTC TGCATTCTCT ACTTGCAGAT CGACGGTGTC
CCGTCGCATT TGCGCTATCT GGTCAGGCGC ATTCGCGCAC GATTGCCGAA CGTGTCGATC
GTGGTTGGAT TGTGGGCGGC GCAGGATACG GAGAAGTGGA GCGCAGATCT GCGAAGCGCT
GTCGGGGCGG AGTGTTATGC GAGCACGCTG CAGGAAATTC TCGCGGCTTG CCGGCGTGTC
GATTCGGCGA GAAGCGGAAC CGAGAAAGTA CTGCCCATCG TGGTCAACGG TTAG
|
|---|
| Protein sequence | MKDIPEPRGV RPATHIRAPA TAFSLDSLIS LAVGVTVVAC LYFASAVLIP ITLAILLSFL
VAPLANALMR LRLGHVASVF AAVVISVSVI GMLGAVIATQ LTDLAAGMPR YQATIEQKME
TAHSLTIGKL NRFASAAGQA LQRATVEPPQ PAPQRGPASR DSARSTASEP AAVPVEVREP
VPTPFELARR VLSPAISPLE TAFIVFVVMV VILLQRDDLR DRAIRLFGSR DLHRTTTVMD
EAARRLSRYF VSQLGLNAGV GVIIGTGLFM IGVPSPILWG ILAALLRLVP YVGIWISATL
ATALAAAVSP GWTMAIWSLA LFVSVEVLVG QIVEPLLYGR STGLSPFSVV VAAIFWSWIW
GPIGLILSTP LTLCLLVLGR HVRRLEFLDV LLGDQPALTP VENFYQRALA GDPDEAIEQA
ELLLRERSLS SYYDEVAIKG LQLAANDVMR GSVTATQLAR IEATTNDLVD GLDGYDDREP
VTSAANENWS AAGPLSPAAS DESNVARTEA ANPPSVTSGH SEETHATNQS PVAASSRVLC
IPGRGPLDAL ATTILLQLLA KHGFASRALP HEAASRASID QLDADDVGIV CILYLQIDGV
PSHLRYLVRR IRARLPNVSI VVGLWAAQDT EKWSADLRSA VGAECYASTL QEILAACRRV
DSARSGTEKV LPIVVNG
|
|---|
| |