| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5220 |
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| Symbol | |
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| ID | 6277309 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 1394329 |
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| End bp | 1396242 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642616306 |
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| Product | type III secretion outer membrane pore, YscC/HrcC family |
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| Protein accession | YP_001888949 |
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| Protein GI | 187919918 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCTTGA CGCGGCGTGT CATAAGCGCG AAAGGGGAAG GACGATACGC AAGGCGATAT
CCCGCAGTAA TAGGGATACG TTCCGCATTC GCTGTAGGAA TCATCCTGTA TGCGTCGATG
GGCAGCACTG CGGAACCGGT GTGGGGCACA CAGGCGTTGC ATTACTTTGC GCGTAACACA
CCGCTACCAG ATGTGTTGAA AGCGGTGGTC AGCGCCGCGG GACTTCAGGT CGAAATCGCA
CGCGGTGTGA AAGGCCCCGT CAACGGGGCG TTCGATGATC CGCCGTCGCG CGTGTTCGCG
AAGCTGGTCG AAGCCTATGG ACTTGCCTGG TACTTCGACG GCAATGTCAT CCATGTATCG
CCCGCCTCCG ATATCCGAAG CCGGACAATC CCCTTTGCTC CGATGACACG CGAGGAGGTA
GCCGGTTTGC TGTCCAGCCT CGGTCTCGCC GACAGCCGTT TGCCGGTTCG GTACTCGGAT
ACGACAGCCG TCGTATCCGG TCCGTCGGGA TTTGTCGATG CGGTTTCCAG TGCCGTTGCA
GAGGCACAGC GGCAGACGAC CATCACGCCT TCCGTCGACG AGACGGTGAT CCGGGTTTTC
CCCCTTCAAT ATGCGCAGGC GCAGGACATC ACGTACACGT CCGGCAACCA GCGTCAGGTC
GTGCCCGGCG TGGCCTCACT GCTGCGCAAG CTCATGGCCG ACGTTCCAGT TAGCGTGCCT
GACCGGGAGA ATGCGACAAG GTCACGCAAC CAGGCACGCG CCGAGCGCGG CGGGCCGCCT
CCGCTGCCGA GCCTGCGAGG CTTGGGCCTG GCCGGGTTGC AACAGGAGCC CGAGCTCGAT
CCGCTTTTGC CGGTCGCTGA AGTCATGCGC CCCGCAGCGG CGCCAATCCA GCGCAACATC
GTTGCCGACG CGCGCACGAA TTCGGTGGTG ATCTATGACG TGCCGTCGAT GATGCCGAGC
TATGCGCGCA CTATCGCGAT GCTGGACAAG CAGCAGGATC TCGTCGAGAT CACGGCGGTC
GTCATCGATA TAACAAGCGA TGCCGCAAGC GACCTGGGCA TACATTGGGG TGGTGCAACG
AGAGGCGGGG CGGGTGGCTA TGCCGTAATG AACTCTTCGC CTACGGTGTT GGCTTCGTCG
CTCATCCCGG CGCTCGCCGG TCTGAACCTG GCAACCATGA TAGGGAGTTC CGCCAACTAC
CTGTTCGCGA AGATTCACCT TCTCGAACAA AGCGGAAAGG CGCGGATTCT GTCCCGACCG
CAAGTGTTGA CGTTGAATAA CTCGGAAGCA ATTCTGTCCT CGCGCAATTC TCTGTACGTT
CGAGTCGCGG GCAATCAGGA CGTCGACCTT TACAACGTCG ACACCGGGCT GACGTTGAAG
GTCACACCTA CAGTGGAATC CGGGTCGGAT AGCGCGAGGA ACATTTTGTT GAGCGTGCAA
ATCGACGATG GCGCATTCGA TTCGTCGCTC TCCGTCGATG GCATTCCGAA GGTCAACAAC
CATTCCATTG TGACGCAGGC GGTGGTCGCG GACGGAGAGA GCCTGCTCCT TGGCGGCTAC
GAATATGAGC GCAGCCAGAC AGCATCTTCG CAGGTGCACG TGCTCGGACA TCTCCCTTAT
GTGGGCGCTT TGTTCCGGGA TACACAGACG CAGGTCGAAC GTCTTGAGCG GCTCATTCTG
ATTACACCTC GTGTCAAACC GATGGTGAAG CTCGTTACGG AACCTGACGG CGCCAATGGC
GTGTCGACTT CCTCGCTTGA GCACCCAGCG CCCTCATTCC CGAGCAGCGC CGGCATAGCG
CGGGCGGCGG TACGGCAGCG CCCGGAAGAC ATGTCGGTGT GGAACGGTGT GACGCCTCCG
CTTCCTCCTG GCCTGCCACC AGGTCCGTCA GCACCCACGG GGCAGATTCG ATGA
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| Protein sequence | MFLTRRVISA KGEGRYARRY PAVIGIRSAF AVGIILYASM GSTAEPVWGT QALHYFARNT
PLPDVLKAVV SAAGLQVEIA RGVKGPVNGA FDDPPSRVFA KLVEAYGLAW YFDGNVIHVS
PASDIRSRTI PFAPMTREEV AGLLSSLGLA DSRLPVRYSD TTAVVSGPSG FVDAVSSAVA
EAQRQTTITP SVDETVIRVF PLQYAQAQDI TYTSGNQRQV VPGVASLLRK LMADVPVSVP
DRENATRSRN QARAERGGPP PLPSLRGLGL AGLQQEPELD PLLPVAEVMR PAAAPIQRNI
VADARTNSVV IYDVPSMMPS YARTIAMLDK QQDLVEITAV VIDITSDAAS DLGIHWGGAT
RGGAGGYAVM NSSPTVLASS LIPALAGLNL ATMIGSSANY LFAKIHLLEQ SGKARILSRP
QVLTLNNSEA ILSSRNSLYV RVAGNQDVDL YNVDTGLTLK VTPTVESGSD SARNILLSVQ
IDDGAFDSSL SVDGIPKVNN HSIVTQAVVA DGESLLLGGY EYERSQTASS QVHVLGHLPY
VGALFRDTQT QVERLERLIL ITPRVKPMVK LVTEPDGANG VSTSSLEHPA PSFPSSAGIA
RAAVRQRPED MSVWNGVTPP LPPGLPPGPS APTGQIR
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