| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5212 |
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| Symbol | |
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| ID | 6280326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 1388748 |
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| End bp | 1389395 |
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| Gene Length | 648 bp |
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| Protein Length | 215 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642616298 |
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| Product | type III secretion system protein |
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| Protein accession | YP_001888941 |
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| Protein GI | 187919910 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4790] Type III secretory pathway, component EscR |
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| TIGRFAM ID | [TIGR01102] type III secretion apparatus protein, YscR/HrcR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.233197 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAGATC AAGTCGTCAA CTTTCAGATA ATCGTCTTTT TCTTCGTGCT GGGTCTGCTG
CCGCTGATCG TGACGATGAC CACGTCGTTC ACCAAGTTCA GCATTGTGCT CACACTGTTG
CGTTCTGCCG TGGGCGTGCA ACAGGCGCCC GGCAACATGG CGATCTCGGC GCTGGCGCTC
GCGGCGACGC TGGTTGTAAT GGCGCCGACA ATGGAGAAGA TCGGTGGCGA TCTGTCGCTC
GGTGAGCGTG TCGAGCGCGG TCAGTTCCCC GACGTGACGG AGGTATACCA GGCGGTGCGC
GGCCCACTCG GCGAATTCAT GATGGAGCAT TCGCGCCCCT CCGAGCGCGC GTTCCTCGTG
ACGGCGGCAA AACGCATCGA CCCGGCACGC GACGCACAGG AAACCGACTT CTCGCTGCTG
ATTCCCGCAT TCATGATCAG CGAAATTTCC AGCGGGTTCG AGGCCGGGTT TCTCCTTTAT
ATGGCGTTTC TCATCATCGA CCTCGTGATC GCTAACGTGT TGACGGCGAT GGGCATGGTG
ATGTTGTCGC CCACCACGGT ATCAACCCCG TTGAAACTCT TCGTGCTTGT GTCCGTATCA
GGCATTTCGA AGCTAATGCA CGGCTTGATT GTCAGCTACG CAAAATGA
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| Protein sequence | MKDQVVNFQI IVFFFVLGLL PLIVTMTTSF TKFSIVLTLL RSAVGVQQAP GNMAISALAL
AATLVVMAPT MEKIGGDLSL GERVERGQFP DVTEVYQAVR GPLGEFMMEH SRPSERAFLV
TAAKRIDPAR DAQETDFSLL IPAFMISEIS SGFEAGFLLY MAFLIIDLVI ANVLTAMGMV
MLSPTTVSTP LKLFVLVSVS GISKLMHGLI VSYAK
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