| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5211 |
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| Symbol | |
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| ID | 6279021 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 1388476 |
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| End bp | 1388751 |
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| Gene Length | 276 bp |
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| Protein Length | 91 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642616297 |
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| Product | type III secretion protein, HrpO family |
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| Protein accession | YP_001888940 |
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| Protein GI | 187919909 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4794] Type III secretory pathway, component EscS |
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| TIGRFAM ID | [TIGR01403] type III secretion protein, HrpO family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.221369 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTTCAT ATCCCTCTCT TGGTTCGTTG TCGAGCGATG CCTTGCTGCT GGTTTTCTGG
TTGTCGCTGC CGGCACTGGC CGTTGCCACG GCAATCGGCG TCGTTGTTGG ACTCCTGCAA
TCGGTGACGC AAATTCAGGA TCAGGCTTTA CCGTACGGCG CGAAGATCAT CGGTGTCGGA
CTCGTGATGA TCGTCGCCAT CCCGTGGGGC AACAGCGAGG TCTCGCGCTT TCTCGATCAC
GCGTTTTCGT ACATCGCGGC GGGACGGGTG CAGTGA
|
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| Protein sequence | MSSYPSLGSL SSDALLLVFW LSLPALAVAT AIGVVVGLLQ SVTQIQDQAL PYGAKIIGVG
LVMIVAIPWG NSEVSRFLDH AFSYIAAGRV Q
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