| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5208 |
|---|
| Symbol | |
|---|
| ID | 6277603 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 1384937 |
|---|
| End bp | 1387012 |
|---|
| Gene Length | 2076 bp |
|---|
| Protein Length | 691 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642616294 |
|---|
| Product | type III secretion FHIPEP protein |
|---|
| Protein accession | YP_001888937 |
|---|
| Protein GI | 187919906 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4789] Type III secretory pathway, component EscV |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.231238 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAA ATATGAAGCT GGGCAATATC GATTTGCCGG GCCTGATCGC GCGTCATGCG
GATCTTGCGG TCGGGGCCGG CATGCTTAGC GTGCTGGTCT TGCTGATTTT GCCGGTTCCG
TCATTCGTAC TCGATCTGTT TATTTGCGTA AGTTTCACCG CGAGCTTCGT CATGCTTGCA
GCGACGATCT ACGCCGCGAA ACCGGTGGAG CTATCCAGTT TTCCGTCTCT CCTGCTCGTG
ACGACCTTGC TGCGGCTCGC CCTTGCGATT GCATCGACCA AGATGATTCT GCTGTACGCG
CACGCGGGAC AGATCATTGG CGCGTTTGGT GAAATCGTGG TGGGCGGTAA CGTGGCGGTC
GGCATGGTGG TCTTCATCGT GTTGTCGGCG ATCCAGTTCA TCGTTGTCGC AAAAGGGGCC
GACCGGGTCG CGGAAGTGTC GGCGCGGTTT ACGCTCGACG GCATTCCCGG CCGTCAGATG
AGCATTGATG CTGATTTGCG CGGTGGTTTG ATCGGCGCGT CCGAGGCGGG CCGGCTGCGC
GGCGAGCTGG AGCGCGAAAC CTATTTCTAT GGCTCGCTCG ACGGAGCGAT GAAGTTCGTC
AAGGGCGATG CGATAGCGGG ACTTGTCGTC GCGCTCGTAA ATATTGCCGG TGGTCTTGCC
GTTGGCATTG CACAACGGGG CATGTCGTTA GCCGAGGCGC TGCACACCTA CACGATCCTG
ACGGTCGGCG ATGGACTGGT CTCGCAGATT CCTTCACTGA TCGTTTCCAT CTCGGCGGGC
CTGCTGGTCA CGCGTGTATC GTCAGGCGGC GTTGGCGGCA ATCTTGGCGG AGACATCTTT
AAACAGCTCT CGGCGCATCC CCCCGCAATG GTGATGGCGG GCACCGCGTG TCTCGCGCTC
GCCTGTATTC CGGGGTTTCC TCATATCCAG TTCGTTCTCG CGGCGGTCGT ACTCATCGGG
CTGGCCGTCG CGCTGATGCG GCAGCGCGCA GCGGCGGACC GCGCGGCGCG ACCGAAGATG
CCGGCCATGA CACGCGACGG CGGCAACTAC GTGCAGCGCA TTCTCGACGA CGTGGAGCTC
GGCACGAGTT CGCCGCTACG TGTACGGCTT GGCAGTGCAG CCTGCAACGC GCTGAACGCT
GCCGAACTCA ACGACCAGCT TGCGCAATTG CGCCGTGACC TGATCGTGAG GTTGGGCGTG
CCATTTCCGG GGCTTGTGCT CCTGCGCGAT CCGCGTCTTG ACGTGGATCG CTACATTGTC
GATATCGACG ACGTGCCGTT CTCCGGCGGC ACGCTGCTGG CGGGACATGT GCTGGTGAGC
GGCGACACTG AACGGGTGAC CATGGAAGGC CCGCCCGGCT ATCATCCGCG CGCGGAGAAA
TCGGTGTGGG TGCGGGCCGA CTCGGCCGCT GGAATCGACG ACACGCAACT CATGAAATCG
AGCGCCAATG GTCTGCTCTG CGATCACCTG ATGGACGTCT GCGAAAAGTG CGCGCCGTCC
TTCGTCGGTA CGCAGGAAAC GCGGTTCCTG CTCAATCTTG TCGGCGCCGA GTTTCGGGAA
CTCGTGACCG TGGCCCAAAA GGTGGTAACG ACAGCGCAGA TCGCTGCCGT GCTGCGCAGT
CTGCTTGAAC AGCGCGTATC GATCCGCAAT ATGCGAGCCA TTCTCGAAGC AATCGTCCAG
GTTCCCGACA GCGAGCGCTC GCACGACCGC ATGGTGCGCG ATGCACGCAT CGCGCTTGCG
CCCCAACTGG TGCGTTCATA TGCGGATTTG AGCAGCTGGG AAGTCCATGC AGCGGTGCTT
GAACCTTCCT GGGAAGCCGA ACTCGAAGCG CAAATAGATC TCGGACCTGA CGGCGAGCCG
CGCTGTGTGC TCGACGCGGA TCGCCTGGAA AGTTTGCAGC GAGGCTTTGC GGCACGAAAC
GATGTGGTGC GCCTCGTGGT GACGACGGCT GTATTGCGTC CTCATCTGGA GCGCGTTCTC
CGCACACTGG GTATGCGGAC CGACGTACTC GCGATGGAAG AAATCCCGCT CGACGAGTAT
CGCGTCCGCG TGATAGCGAC GCTTGCGCCA GCCTGA
|
|---|
| Protein sequence | MMKNMKLGNI DLPGLIARHA DLAVGAGMLS VLVLLILPVP SFVLDLFICV SFTASFVMLA
ATIYAAKPVE LSSFPSLLLV TTLLRLALAI ASTKMILLYA HAGQIIGAFG EIVVGGNVAV
GMVVFIVLSA IQFIVVAKGA DRVAEVSARF TLDGIPGRQM SIDADLRGGL IGASEAGRLR
GELERETYFY GSLDGAMKFV KGDAIAGLVV ALVNIAGGLA VGIAQRGMSL AEALHTYTIL
TVGDGLVSQI PSLIVSISAG LLVTRVSSGG VGGNLGGDIF KQLSAHPPAM VMAGTACLAL
ACIPGFPHIQ FVLAAVVLIG LAVALMRQRA AADRAARPKM PAMTRDGGNY VQRILDDVEL
GTSSPLRVRL GSAACNALNA AELNDQLAQL RRDLIVRLGV PFPGLVLLRD PRLDVDRYIV
DIDDVPFSGG TLLAGHVLVS GDTERVTMEG PPGYHPRAEK SVWVRADSAA GIDDTQLMKS
SANGLLCDHL MDVCEKCAPS FVGTQETRFL LNLVGAEFRE LVTVAQKVVT TAQIAAVLRS
LLEQRVSIRN MRAILEAIVQ VPDSERSHDR MVRDARIALA PQLVRSYADL SSWEVHAAVL
EPSWEAELEA QIDLGPDGEP RCVLDADRLE SLQRGFAARN DVVRLVVTTA VLRPHLERVL
RTLGMRTDVL AMEEIPLDEY RVRVIATLAP A
|
|---|
| |