| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5197 |
|---|
| Symbol | |
|---|
| ID | 6280433 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 1366839 |
|---|
| End bp | 1368461 |
|---|
| Gene Length | 1623 bp |
|---|
| Protein Length | 540 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642616283 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001888926 |
|---|
| Protein GI | 187919895 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAGC CGGTTGCGGT CGCGGCCGCG TCATCGCCTC AGGTTCCATT GATCCGTGTT
GCGGGCGTCA CCAAGCGATT TGGCGGCGTG CACGCGCTGC GCGGCGTCAA CCTCGAAGTG
TTGCCCGGCG AAGTCCACGC ATTGCTCGGC GAAAACGGCG CGGGCAAATC CACGCTGATC
AAGATCCTGA GCGGCGTGCA TGCTTACGAC GACGGCGTCA TCGAAATCGC CGGCCAGAAG
GTCGCGTTCG ACTCCCCCGC TCAATCGCGC GACGCGGGTG TCGCCGTGGT CTACCAGGAT
TTGAGTCTCG TCGAATCGCT CTCGGTCGGC GCCAATCTCA TGTTGGGACG CGAGCCGCGC
ACGCGTCTGG GCTTCGTGAA GAACCGTCAG CTCATGGCCA CGGTCGGCGA GTTCCTGCGC
TCGCACGGCA TTCCACTCGA TCCGAAAGCA CCGGTCGGCT CGCTGCCCTT CGCTTACCGC
CAGATGACCG AGATTTGCAA GGCGCTGATG GGCGAAGTGC GCGTGCTGAT CCTCGATGAA
CCCACTTCCG CATTGACCGG CGGCGAAGAG CAGATTCTGT TCGACGCGAT TCGCGCGGTC
ACGGCGCGCG GCGTCGGCGT GATCTATGTG ACGCATCGCT TGAACGAGGT GTTCAGGATT
TCGCAGCGCG TGACCGTGTT CCGCGATGGT GCGAACGCCG GCACATTCCA GACGGCGCAA
ACGGATATGA AGCAACTGGT GGCGGCGATC GTTGGTCCCG CTCATGCCGC GTTGCAGGCG
CGGCAGAAAA CGGCGGTGGG CGATGGAGCC GCAGTGGTGA CCACTACTGC AAGCGCGTTG
CCGGTAGCTG AACAAGCGTC CAACACCGAC GCCGCGCCCG TACTCAAGTT ATCGAACGTC
AGCAACGACC GCCTGCATCA CATCGACCTC GTGGTTCGGC GCGGCGAAGT CCACGGACTC
GCGGGATTGA TCGGCAGCGG ACGCACCGAG ATTCTGCAAA CCGTCTTTGG CCTGCGATCC
GTCGACGCCG GCAGCATCGA ACTGGACGGT CGGACGCGCT CACGCATCAC ACCCGCCGAG
GCGATCCAGC TCGGCGTGGC GCTGGTGCCG GAGGATCGTC ATTTGGAAGG GCTCGTGCTC
GATCATTCGA TCGAACGCAA TCTGACGCTG CCGCGCTTGC CGCATTTTTC CCGCTGGGGA
TGGCTGCGTA GTCAGGCCGC CGTTCAGCAG GCGAAGCGCT CCATGAAAGA GCTGGCCGTG
AAAGCACCCA ACTCATCGAC CGCGGTCAAG TTCTTATCCG GTGGCAATCA GCAGAAAGTG
GTCTTCGCGA AGTGGAATCA TCCGCGCCCC AAACTGCTCA TGCTCGACGA ACCGACGGTC
GGCGTGGATG TCGGCGCGCG CGAGGAAATC TACGGCGTGG TGAACGACGC CGCGCAAGCC
GGCACCGGCG TGCTCGTCGT CTCGTCGGAC CTCGATGAAC TCCTGCGCCT GTGCGACCGC
ATTTCGATTG TCGCGGACGG CTGCATTGTC AACACCGTCG AGCGCGCGGA ACTCGCCAAT
GCCGAAGCGC TGCATCACCT GATCCAACTT TCCCGTTCTT CCCTCGAGGC GTTAGCAACA
TGA
|
|---|
| Protein sequence | MSEPVAVAAA SSPQVPLIRV AGVTKRFGGV HALRGVNLEV LPGEVHALLG ENGAGKSTLI
KILSGVHAYD DGVIEIAGQK VAFDSPAQSR DAGVAVVYQD LSLVESLSVG ANLMLGREPR
TRLGFVKNRQ LMATVGEFLR SHGIPLDPKA PVGSLPFAYR QMTEICKALM GEVRVLILDE
PTSALTGGEE QILFDAIRAV TARGVGVIYV THRLNEVFRI SQRVTVFRDG ANAGTFQTAQ
TDMKQLVAAI VGPAHAALQA RQKTAVGDGA AVVTTTASAL PVAEQASNTD AAPVLKLSNV
SNDRLHHIDL VVRRGEVHGL AGLIGSGRTE ILQTVFGLRS VDAGSIELDG RTRSRITPAE
AIQLGVALVP EDRHLEGLVL DHSIERNLTL PRLPHFSRWG WLRSQAAVQQ AKRSMKELAV
KAPNSSTAVK FLSGGNQQKV VFAKWNHPRP KLLMLDEPTV GVDVGAREEI YGVVNDAAQA
GTGVLVVSSD LDELLRLCDR ISIVADGCIV NTVERAELAN AEALHHLIQL SRSSLEALAT
|
|---|
| |