| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5142 |
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| Symbol | |
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| ID | 6279083 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 1307661 |
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| End bp | 1308233 |
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| Gene Length | 573 bp |
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| Protein Length | 190 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 642616230 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_001888873 |
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| Protein GI | 187919842 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.714756 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACCGAA CTACCGAAAA TGGACCGGCG AGTCCCGTCG AAGAGAGACT GAAAGCTCTC
TTCGTGCGCG GTCTGGATGG GAACGCGGCG GCTTATCAGG CGTTTCTCAG CGACCTGACC
GGGCATCTGC GCGGATTCCT GAGAAAGCGT CTCTTCTATC TGCAAGACGA TGTCGAGGAC
CTGGTCCAGG AGATTTTGCT GGCAGTGCAT AATGGACGCC ATACCTACCG TCCGGACCAG
CCGTTGACGG CCTGGGTGCA TGCGATCGCC CGCTATAAAC TGGCGGACTT TTTTCGCGCA
CGCTCGCGCC GGGAAGCCTT GCACATGCCG CTGGACGATG AACTCGAGAT CTTCGCCACC
TGTGATGTCG AACCTGCGGA GGCCCGGCGT GACCTGAGCA AGCTGCTCGA ACAGTTGCCC
GACCGTCAGC GCCTGCCGAT TCTGCACGTC AAGCTGGAAG GGCTGTCGGT GACTGAAACC
GCAAAGCTCA CTGGCCTGTC GGAGTCGGCG GTCAAGGTTG GCGTGCACCG CGGTTTGAAA
GCATTGGCAC TGAAGTTTCA AGGCACATCA TGA
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| Protein sequence | MNRTTENGPA SPVEERLKAL FVRGLDGNAA AYQAFLSDLT GHLRGFLRKR LFYLQDDVED
LVQEILLAVH NGRHTYRPDQ PLTAWVHAIA RYKLADFFRA RSRREALHMP LDDELEIFAT
CDVEPAEARR DLSKLLEQLP DRQRLPILHV KLEGLSVTET AKLTGLSESA VKVGVHRGLK
ALALKFQGTS
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