| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5017 |
|---|
| Symbol | |
|---|
| ID | 6278837 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 1169344 |
|---|
| End bp | 1170786 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642616108 |
|---|
| Product | Di-haem cytochrome c peroxidase |
|---|
| Protein accession | YP_001888751 |
|---|
| Protein GI | 187919720 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1858] Cytochrome c peroxidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.130881 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.0650022 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCATC CTTCTGACGC CGCCTTGTCT TCGCCTCTGC CCGCAGGCGG CGAGCCCGGC
CCCGTGATTA CCCGCCGCTC GTGGCTCAGG CTGCTCGCGT GGAGCGCGGC AGGTATCGTG
CTCGCGATCA TCGTCTATTG CGCGTATGCG CTCGTGTACC CGGAGCGCGC GCCGTCCGCT
ATCGGCGAGA TCGTCGAGGA AATCACCGGC GCGAATCCGC ATCCTGTGAC GTTGATGCGT
CCGCAAAATG CGCCGCTGAG CGCCGTGGCG CTGCTAGGCA AACAGATTTT CTTCGACCAG
AGTTTGTCGG CCTCGGGCAC GCAGTCGTGT GCTTCGTGTC ACTCGCCGCA GCATTCGTAT
GGGCCGGACA ACGCGTTTCC GGTGCAACTC GGCGGCGCGC ATATGAACCT GGCGGGTTAT
CGTCCGCCGC CGTCGCTCAC CTATCTGTAC CGTCAGGCGC CGTTCAGCAT CGGCCCGGAT
CAGGGCGACA CCGACGTGCC GGTGGATATG ACGCAACTGG CAACGCAAGC CGCCGGCGTG
CAGCGCGCGC AAAAGACCGC GCTCGCCGCG CCCGCCGCTC CGGCAATGGT GCCGCAAGGC
GGTTTGTTCT GGGACGGCCG TGCCGATACT TTGCAGGACC AGGCACTCGG ACCTTTGACC
AACCCGGTGG AAATGGCCAA CGCAACGCCG GCAGATGTCG CTCACAAGCT GCTGGCGACC
AAATATGTGG ATCAATTCAA GCAGATCTTC GGACCGGGTA TCGTCACCAA CCCGAGCCTG
ATGGTGTCCG AGGCGATGTT CGCCGTGGGG CGTTATCAGA TCGAGGATCA ATCGTTCCAC
GCTTTCAGCA GCAAGTACGA CTACTGGCTC GAAGGCAAGG CGCGTTTGAC GCATGCCGAG
CTGCACGGCT TGCAGTTGTT CAACGACAAG GACAAGGCGA ACTGCGCCGG CTGCCACTTG
AGCCAGCCGA GCAAGGACGG CTTGCCGCCA GTGTTCACCG ACACGCAATA CGAAGCGCTC
GGCGTGCCGC GCAATCCGGC GATTCCGGCC AACAAGGATC CGAAGTTCTT CGACATGGGC
GTGTGCGGCC CATTCCGCAA CGACCTTGCC AAACAGACAC AGTATTGCGG CATGTTCCTC
ACGCCGACGC TGCGCAATTC GGCTGAACGC AAGGTGTTTT TCCACAACGG CGTGTACCAC
GATCTCAAGC AGGTGATGGA CTTCTACAAC CTGCGCAATA CGTCGCCGGA GAAAATCTAT
CCGCGCGATG CGTCGGGCAA GGTGCAGAAG TACAACGATC TGCCGGCTCA GTACCACGCC
AACGTGGACG TGGCCGACGC GCCGTTCGAC CGCAAGTTCG GCGATCAGCC GGCCATGAGC
GATGAGGATA TTCAGGACAT CATCGCGTTC ATGAAGACGC TGAGCGACGG GTACAAGAAC
TGA
|
|---|
| Protein sequence | MNHPSDAALS SPLPAGGEPG PVITRRSWLR LLAWSAAGIV LAIIVYCAYA LVYPERAPSA
IGEIVEEITG ANPHPVTLMR PQNAPLSAVA LLGKQIFFDQ SLSASGTQSC ASCHSPQHSY
GPDNAFPVQL GGAHMNLAGY RPPPSLTYLY RQAPFSIGPD QGDTDVPVDM TQLATQAAGV
QRAQKTALAA PAAPAMVPQG GLFWDGRADT LQDQALGPLT NPVEMANATP ADVAHKLLAT
KYVDQFKQIF GPGIVTNPSL MVSEAMFAVG RYQIEDQSFH AFSSKYDYWL EGKARLTHAE
LHGLQLFNDK DKANCAGCHL SQPSKDGLPP VFTDTQYEAL GVPRNPAIPA NKDPKFFDMG
VCGPFRNDLA KQTQYCGMFL TPTLRNSAER KVFFHNGVYH DLKQVMDFYN LRNTSPEKIY
PRDASGKVQK YNDLPAQYHA NVDVADAPFD RKFGDQPAMS DEDIQDIIAF MKTLSDGYKN
|
|---|
| |