| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4887 |
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| Symbol | |
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| ID | 6278358 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 1010360 |
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| End bp | 1011436 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642615973 |
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| Product | TRAP transporter solute receptor, TAXI family |
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| Protein accession | YP_001888621 |
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| Protein GI | 187919590 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0373897 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.393187 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAAGA GACTTCTCGC GGGATGGCTG GGGCTGGCGC TGATGGTCGT ATCTTCACTG
GCCTGCGCGG AGCCGGCGCA CTACAAGATC GTCACCGGTC CGGAACGGGG CACGTATATC
CAGATCGGCC AGGATCTGTC GAAATGGGTC GCGCCGCCAG CAGGCATCGA CCTGGAAGTC
ATGGCGTCGA AGGGCTCGGC TGAAAACGTG CAACGCATGC GCTTCGAGCC GGGGGTGAAA
CTGGCGCTCG TGCAATCCGA CGTGTATCAG GCTTACATCG ACATGGCCAA CGCCGGCAAC
GCCGACGCCG GCACGGCGAT CCGTCCGCTG CGGCTCATCA TGCCGCTGTA CGACGAGGAA
ATTAACGTCG TGGTGCGCGC GGACTCGCCA CTGAAAACCC TCGCCGATAT CAAGGACAAA
AGCATTAGCG TCGGCCTGAT CGGCAGCGGT ACCGCGCAGT CGGCCACGAC GCTCTATCAC
CTGATGTTCG GCCAGCCGAT TCCCGAGCAG AACATCCAGC ATCTGAGCAA CGAAGATGCG
TTGGCCGCGT TGATCGTGAA GAAAGTGGAT GTCGCGATCA TCGTGGTCGG ACAGCCGGCC
AAACTGTTCA ACGACATGAA TCCCGACCTG TTGCAGCAGA TCCGTCTTCT GAAGGCCGAT
CCGGCCGCTC CCGAAACTAT CCGCGCCAAA CAGACCTATT TCCCCACGAC GATCCGCGCG
GCCAGTTATC CGACCTGGCT CAAGGAAGAT GTGCCCGCAC TGACCGTCAA AGCCTTTCTC
GTCACCTACG ACTATGGCCT GCGCGATACC GTCGGCAATC TGAATCATTT TGCTGACTCG
CTCTGCGCCA ACTTCGACAA TCTCCAGGAA CACGGGCATC CGAAATGGAA GCAGGTGAAG
CTGGAGTTGC CGCCGCTCGT GCGCGGGTGG AAATACTACT CGCCGGTCGA GAAGCATTTG
CGCGCGTGTC TCACGAACAA GAGCGCCGCG ATGAGCGCGA CGGCGGCACA GCAGGGCACG
CCGAGACCGC GTCCGACGTG CACGGATCAG GAGCGCTTGC TTCTGCTGTG CAAGTAA
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| Protein sequence | MLKRLLAGWL GLALMVVSSL ACAEPAHYKI VTGPERGTYI QIGQDLSKWV APPAGIDLEV
MASKGSAENV QRMRFEPGVK LALVQSDVYQ AYIDMANAGN ADAGTAIRPL RLIMPLYDEE
INVVVRADSP LKTLADIKDK SISVGLIGSG TAQSATTLYH LMFGQPIPEQ NIQHLSNEDA
LAALIVKKVD VAIIVVGQPA KLFNDMNPDL LQQIRLLKAD PAAPETIRAK QTYFPTTIRA
ASYPTWLKED VPALTVKAFL VTYDYGLRDT VGNLNHFADS LCANFDNLQE HGHPKWKQVK
LELPPLVRGW KYYSPVEKHL RACLTNKSAA MSATAAQQGT PRPRPTCTDQ ERLLLLCK
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