| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4818 |
|---|
| Symbol | |
|---|
| ID | 6278400 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 932214 |
|---|
| End bp | 933098 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642615905 |
|---|
| Product | malonate decarboxylase subunit beta |
|---|
| Protein accession | YP_001888553 |
|---|
| Protein GI | 187919522 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0777] Acetyl-CoA carboxylase beta subunit |
|---|
| TIGRFAM ID | [TIGR03133] malonate decarboxylase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.049139 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.0262322 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACGC TTGCGACCGC TCAACCCGCG CCGATGCTGC GCGAGAGTTT CATCGAAATG
CCGGCGCGCG AGCGCGCCCG CTCGCTGCTC GATGCGGGCA CTTTCCGCGA ACTGCTCGGC
CCGTTCGACA AGATCGAATC GCCGTGGCTG CCGTTGCAAG GCGTCGTCTG CCAGGCGGAC
GACGGCTGCG TGATCGCGCG CGGCACCATC GATGGCGAGC CCGCCGTGGT CGCCGCGATC
GAGTCCGCGT TCCAGGGTGG CAGCATCGGC GAAGTGTCGG GCAGCAAGAT CGCCGCCGCG
CTCGAACTGG CCCTGCGCGA CTGCGAACGC GGCAAGATCG TGCGGCCGGT CGTGCTGTTC
GAAACCGGCG GCGTGCGGCT TCAGGAAGCC AACCTCGGCC TCGCGGTGAT CGCGGAGATT
CAGGCGGCGA TCGTCGCGTT GCGCCGGCAT GTGCCGGTGG TCGGTGTGAT CGCGGGCATG
GTCGGCTGTT TTGGCGGCAT GTCGCTGGCG GCCGCGTTGT GTTCGTATCT GGTCGTCACA
AAGCAAGGGC GGCTCGGCAT GAACGGCCCC GAAGTGATCG AACAGGAAGC CGGCATCGAC
GAACTCGACG CCAGCGACCG CCGCCGCGTG TGGCAGCTGA TCGGCGGCGA ACAGCGCACG
GCGACGGCCC TCGCCGATAC GTTGGTCGAC GACGATGCGG ACGCTGTGCG CGCCGCCGTG
CGTTCCGCCT TCGAGCAAGG CGTGCCTGCC GCGCATCGCA CCGAACAGGT CGACGTGTTC
CTCGACCGGC TCGCGCGGAT CGATCCCGCC GGCGTTACGC CCGAAAACAT GCGTGACGTG
TTCAACCGTC AAACGCAAAA CGAATCGTGC AAGGAGCAAG CATGA
|
|---|
| Protein sequence | MNTLATAQPA PMLRESFIEM PARERARSLL DAGTFRELLG PFDKIESPWL PLQGVVCQAD
DGCVIARGTI DGEPAVVAAI ESAFQGGSIG EVSGSKIAAA LELALRDCER GKIVRPVVLF
ETGGVRLQEA NLGLAVIAEI QAAIVALRRH VPVVGVIAGM VGCFGGMSLA AALCSYLVVT
KQGRLGMNGP EVIEQEAGID ELDASDRRRV WQLIGGEQRT ATALADTLVD DDADAVRAAV
RSAFEQGVPA AHRTEQVDVF LDRLARIDPA GVTPENMRDV FNRQTQNESC KEQA
|
|---|
| |