Gene SbBS512_E4195 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E4195 
Symbol 
ID6270621 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand+ 
Start bp3920141 
End bp3920764 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content45% 
IMG OID641728016 
ProductLpfC 
Protein accessionYP_001882437 
Protein GI187732905 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3188] P pilus assembly protein, porin PapC 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones55 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGACGA CCAGAATAGT GGTTGGCCTC ACGGCAGGGA CGTGTCTGAT TTTCTCGCAA 
AACCTGATGG CCGAGGTCAG TGTATTCAAT CCGGCGCTTC TGGAAATCGA CCATCAATCC 
GGAGTCGATA TTCGCCAGTT TAATCGGGCA AACCTGATGC CCCCAGGTGT TTATAGCGTT 
GATATTTTTA TCAACGGTAA AATGTTTGAA CGTCAGGATG TGACATTTGT TCAGAATAAT 
CCAGATGCTG ATCTGCACGC TTGCTTTATT GCCATTAAAA AAACACTGTC CTCCTTTGGC 
ATAAAAGTTG ATGCGCTCAA ATCGTTCAAT GATGTGGATG AGACGGTTTG CCTCGATCCT 
GCTCCACGTA TTGAAGGCTC ATCCTGGCAG TTTGACAGTG ATAAATTGCA GCTGAATATA 
TCCATTCCCC AAATCTACAT GGACGCGATG GCTTATGATT ACATCAGCCC CACGCGTTGG 
GATGAGGGGA TTAACGCGCT CACCATCAAC TACGATTTTT CTGGTTCACA TACACTACGT 
TCAGATTATG GTTCACAAGA GACAGATACC AGTTATCTCA ATCTGCGCAA TGGACTGAAT 
ATTGGACGTA AGCGTACAGC CTGA
 
Protein sequence
MMTTRIVVGL TAGTCLIFSQ NLMAEVSVFN PALLEIDHQS GVDIRQFNRA NLMPPGVYSV 
DIFINGKMFE RQDVTFVQNN PDADLHACFI AIKKTLSSFG IKVDALKSFN DVDETVCLDP 
APRIEGSSWQ FDSDKLQLNI SIPQIYMDAM AYDYISPTRW DEGINALTIN YDFSGSHTLR 
SDYGSQETDT SYLNLRNGLN IGRKRTA