Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E3540 |
Symbol | mdh |
ID | 6269384 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 3291774 |
End bp | 3292712 |
Gene Length | 939 bp |
Protein Length | 312 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641727411 |
Product | malate dehydrogenase |
Protein accession | YP_001881857 |
Protein GI | 187733000 |
COG category | [C] Energy production and conversion |
COG ID | [COG0039] Malate/lactate dehydrogenases |
TIGRFAM ID | [TIGR01772] malate dehydrogenase, NAD-dependent |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAGTCG CAGTCCTCGG CGCTGCTGGC GGTATTGGCC AGGCGCTTGC ACTACTGTTA AAAACCCAAC TGCCTTCAGG TTCAGAACTC TCTCTGTATG ATATCGCTCC AGTGACTCCC GGTGTGGCTG TCGATCTGAG CCATATCCCT ACTGCTGTGA AAATCAAAGG TTTTTCTGGT GAAGATGCGA CTCCGGCGCT GGAAGGCGCA GATGTCGTTC TTATCTCTGC AGGTGTAGCG CGTAAACCGG GTATGGATCG TTCCGACCTG TTTAACGTTA ACGCCGGCAT CGTGAAAAAC CTGGTACAGC AAGTTGCGAA AACCTGCCCG AAAGCGTGCA TTGGTATTAT CACTAACCCG GTTAACACCA CAGTTGCAAT TGCTGCTGAA GTGCTGAAAA AAGCCGGTGT TTATGACAAA AACAAACTGT TCGGCGTTAC CACGCTGGAT ATCATTCGTT CCAACACCTT TGTTGCGGAA CTGAAAGGCA AACAGCCAGG CGAAGTTGAA GTGCCGGTTA TTGGCGGTCA CTCTGGTGTT ACCATTCTGC CGCTGCTGTC ACAGGTTCCT GGCGTTAGTT TTACCGAGCA GGAAGTGGCT GATCTGACCA AACGTATCCA GAACGCGGGT ACTGAGGTGG TTGAAGCGAA AGCCGGTGGC GGGTCTGCAA CCCTGTCTAT GGGCCAGGCA GCTGCACGTT TTGGTCTGTC TCTGGTTCGT GCACTGCAGG GCGAACAAGG CGTTGTCGAA TGTGCCTACG TTGAAGGCGA CGGTCAGTAC GCCCGTTTCT TCTCTCAACC GCTGCTGCTG GGTAAAAACG GCGTGGAAGA GCGTAAATCT ATCGGTACCC TGAGCGCATT TGAACAGAAC GCGCTGGAAG GTATGCTGGA TACGCTCAAG AAAGATATCG CCCTGGGCGA AGAGTTCGTT AATAAGTAA
|
Protein sequence | MKVAVLGAAG GIGQALALLL KTQLPSGSEL SLYDIAPVTP GVAVDLSHIP TAVKIKGFSG EDATPALEGA DVVLISAGVA RKPGMDRSDL FNVNAGIVKN LVQQVAKTCP KACIGIITNP VNTTVAIAAE VLKKAGVYDK NKLFGVTTLD IIRSNTFVAE LKGKQPGEVE VPVIGGHSGV TILPLLSQVP GVSFTEQEVA DLTKRIQNAG TEVVEAKAGG GSATLSMGQA AARFGLSLVR ALQGEQGVVE CAYVEGDGQY ARFFSQPLLL GKNGVEERKS IGTLSAFEQN ALEGMLDTLK KDIALGEEFV NK
|
| |