Gene SbBS512_E3217 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E3217 
SymbolcsiR 
ID6271753 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand- 
Start bp2998179 
End bp2998841 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content53% 
IMG OID641727132 
ProductDNA-binding transcriptional regulator CsiR 
Protein accessionYP_001881586 
Protein GI187732745 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones53 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCATTA CGTCTCTGGA TGGCTATCGC TGGCTGAAGA ACGATATTAT TCGCGGTAAT 
TTTCAACCGG ATGAAAAATT ACGGATGAGT TTGCTGACAT CGCGTTATGC ACTTGGCGTT 
GGGCCGTTGC GGGAAGCACT TTCTCAACTG GTGGCGGAAC GGCTGGTCAC GGTGGTGAAT 
CAAAAAGGGT ATCGGGTGGC GTCTATGTCA GAGCAGGAGC TGCTCGATAT TTTCGATGCC 
CGCGCCAATA TGGAAGCGAT GTTAGTGAGT CTGGCGATTG CCCGCGGTAG CGATGAGTGG 
GAGGCAGAAG TTCTCGCAAA AGCGCATCTG CTCAGTAAGC TGGAAGCCTG TGACGCCAGC 
GAGAAAATGC TTGATGAGTG GGATCTGCGT CATCAGGCGT TTCATACAGC AATTGTGGCG 
GGCTGTGGTT CTCACTATTT GCTGCAAATG CGTGAACGGT TGTTTGATCT GGCGGCGCGC 
TATCGATTTA TCTGGCTGCG GCGAACGGTG CTTTCGGTAG AAATGCTGGA GGATAAACAC 
GATCAGCACC AGACCCTGAC TGCGGCGGTA CTGGCGCGAG ATACCGCGCG CGCCAGTGAG 
TTAATGCGCC AGCATTTACT GACGCCAATT CCCATTATCC AGCAGGCGAT GGCTGGCAAT 
TAA
 
Protein sequence
MTITSLDGYR WLKNDIIRGN FQPDEKLRMS LLTSRYALGV GPLREALSQL VAERLVTVVN 
QKGYRVASMS EQELLDIFDA RANMEAMLVS LAIARGSDEW EAEVLAKAHL LSKLEACDAS 
EKMLDEWDLR HQAFHTAIVA GCGSHYLLQM RERLFDLAAR YRFIWLRRTV LSVEMLEDKH 
DQHQTLTAAV LARDTARASE LMRQHLLTPI PIIQQAMAGN