Gene SbBS512_E3117 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E3117 
Symbolcas5e 
ID6268384 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand+ 
Start bp2911968 
End bp2912609 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content54% 
IMG OID641727042 
ProductCRISPR-associated protein Cas5 
Protein accessionYP_001881501 
Protein GI187733438 
COG category 
COG ID 
TIGRFAM ID[TIGR01868] CRISPR system CASCADE complex protein CasD/Cas5e 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGCTGGGGC TGCTGGCTGC CGGGGTAGGG ATCCGGCGTG ATGATACCGA ACGCTTAAAC 
GCGTTTAATC GCCACTATTC ACTGGTGGTT TGCGCCAGCC GTAACCCGCG CTGGGCACGG 
GATTATCACA CGGTCCAGAT GCCAAAAGAG GTGCGTAAAG CACGTTATTT CAGCCGTCGC 
GAAGAGTTGA GCGACCCTGA GCTTTTGAGC GCGATTATCT CCCGGCGCGA CTACTACACC 
GATGCCTGGT GGATGGTGGC GGTGGCAACA ACAGCCGATG CGCCTTACAG CCTCGAACAG 
TTGCAGGACG GTTTACGCCA TCCAGTTTTT CCGCTTTATC TGGGGCGAAA AAGTCATCCG 
CTGGCATTAC CTCTTGCGCC GTTACTGCTC GAAGGCAACG CGTGTGATGC CTTATGTAAT 
GCATACCAAC AGTATCAGGA TCATTTCCAT AAACTGAAAG TTTCACTCCC GAAACTTCAG 
GATGAATGCT GGTGGGAAGG GAAACACGAC GGCCTGGTCG CGAGCAAAAT ATTACGCCGC 
CGGGATGTTC CTTTAAATCG TCAGCAGTGG CTGTTTGGGG AACGCACCGT CAATCAGGGG 
CCGTGGCTCA GCAAGGAGGA ACCATGTACC TCTCAAGAAT AA
 
Protein sequence
MLGLLAAGVG IRRDDTERLN AFNRHYSLVV CASRNPRWAR DYHTVQMPKE VRKARYFSRR 
EELSDPELLS AIISRRDYYT DAWWMVAVAT TADAPYSLEQ LQDGLRHPVF PLYLGRKSHP 
LALPLAPLLL EGNACDALCN AYQQYQDHFH KLKVSLPKLQ DECWWEGKHD GLVASKILRR 
RDVPLNRQQW LFGERTVNQG PWLSKEEPCT SQE