Gene SbBS512_E2202 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E2202 
SymbolpotD 
ID6271859 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp2000155 
End bp2001201 
Gene Length1047 bp 
Protein Length348 aa 
Translation table11 
GC content51% 
IMG OID641726225 
Productspermidine/putrescine ABC transporter periplasmic substrate-binding protein 
Protein accessionYP_001880710 
Protein GI187731302 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0687] Spermidine/putrescine-binding periplasmic protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAT GGTCACGCCA CCTGCTCGCG GCGGGTGCTC TGGCACTGGG CATGAGCGCC 
GCTCACGCCG ATGACAACAA CACGCTGTAT TTCTACAACT GGACCGAGTA CGTGCCGCCA
GGACTGCTTG AACAGTTCAC CAAAGAAACC GGTATTAAGG TTATCTATTC GACTTACGAG
TCGAACGAAA CCATGTACGC CAAGCTGAAA ACGTACAAAG ACGGTGCGTA TGACCTGGTG
GTTCCTTCAA CCTATTACGT CGATAAAATG CGTAAAGAAG GGATGATCCA GAAGATCGAC
AAGTCGAAGT TAACGAACTT CAGCAATCTC GATCCAGACA TGCTCAACAA GCCTTTTGAC
CCGAATAACG ACTACTCCAT TCCGTATATC TGGGGGGCGA CGGCGATTGG TGTTAACGGT
GATGCGGTGG ATCCGAAATC TGTCACCAGC TGGGCCTATC TGTGGAAGCC AGAGTACAAA
GGCAGCCTGC TGTTGACCGA CGATGCCCGT GAAGTGTTCC AGATGGCGCT GCGTAAGCTG
GGCTATTCCG GTAACACCAC CGATCCGAAA GAGATTGAAG CTGCATATAA CGAGCTGAAA
AAACTGATGC CAAACGTCGC AGCGTTTAAC TCCGATAACC CGGCTAACCC GTACATGGAA
GGCGAAGTTA ACCTCGGCAT GATCTGGAAC GGTTCTGCTT TCGTTGCACG CCAGGCGGGT
ACGCCTATTG ACGTGGTGTG GCCGAAAGAA GGCGGCATAT TCTGGATGGA CAGCCTGGCG
ATCCCGGCAA ATGCCAAAAA CAAAGAAGGC GCGCTGAAAT TGATCAACTT CCTGCTGCGC
CCGGATGTGG CAAAACAGGT TGCTGAAACT ATCGGTTATC CAACGCCAAA CCTTGCGGCG
CGTAAGCTGT TAAGTCCAGA AGTGGCGAAC GATAAAACGC TCTACCCGGA TGCTGAAACC
ATTAAAAATG GCGAATGGCA GAATGACGTT GGCGCAGCCA GCAGCATTTA TGAAGAGTAT
TATCAGAAGC TGAAAGCAGG ACGTTAA
 
Protein sequence
MKKWSRHLLA AGALALGMSA AHADDNNTLY FYNWTEYVPP GLLEQFTKET GIKVIYSTYE 
SNETMYAKLK TYKDGAYDLV VPSTYYVDKM RKEGMIQKID KSKLTNFSNL DPDMLNKPFD
PNNDYSIPYI WGATAIGVNG DAVDPKSVTS WAYLWKPEYK GSLLLTDDAR EVFQMALRKL
GYSGNTTDPK EIEAAYNELK KLMPNVAAFN SDNPANPYME GEVNLGMIWN GSAFVARQAG
TPIDVVWPKE GGIFWMDSLA IPANAKNKEG ALKLINFLLR PDVAKQVAET IGYPTPNLAA
RKLLSPEVAN DKTLYPDAET IKNGEWQNDV GAASSIYEEY YQKLKAGR