Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E2202 |
Symbol | potD |
ID | 6271859 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 2000155 |
End bp | 2001201 |
Gene Length | 1047 bp |
Protein Length | 348 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641726225 |
Product | spermidine/putrescine ABC transporter periplasmic substrate-binding protein |
Protein accession | YP_001880710 |
Protein GI | 187731302 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAT GGTCACGCCA CCTGCTCGCG GCGGGTGCTC TGGCACTGGG CATGAGCGCC GCTCACGCCG ATGACAACAA CACGCTGTAT TTCTACAACT GGACCGAGTA CGTGCCGCCA GGACTGCTTG AACAGTTCAC CAAAGAAACC GGTATTAAGG TTATCTATTC GACTTACGAG TCGAACGAAA CCATGTACGC CAAGCTGAAA ACGTACAAAG ACGGTGCGTA TGACCTGGTG GTTCCTTCAA CCTATTACGT CGATAAAATG CGTAAAGAAG GGATGATCCA GAAGATCGAC AAGTCGAAGT TAACGAACTT CAGCAATCTC GATCCAGACA TGCTCAACAA GCCTTTTGAC CCGAATAACG ACTACTCCAT TCCGTATATC TGGGGGGCGA CGGCGATTGG TGTTAACGGT GATGCGGTGG ATCCGAAATC TGTCACCAGC TGGGCCTATC TGTGGAAGCC AGAGTACAAA GGCAGCCTGC TGTTGACCGA CGATGCCCGT GAAGTGTTCC AGATGGCGCT GCGTAAGCTG GGCTATTCCG GTAACACCAC CGATCCGAAA GAGATTGAAG CTGCATATAA CGAGCTGAAA AAACTGATGC CAAACGTCGC AGCGTTTAAC TCCGATAACC CGGCTAACCC GTACATGGAA GGCGAAGTTA ACCTCGGCAT GATCTGGAAC GGTTCTGCTT TCGTTGCACG CCAGGCGGGT ACGCCTATTG ACGTGGTGTG GCCGAAAGAA GGCGGCATAT TCTGGATGGA CAGCCTGGCG ATCCCGGCAA ATGCCAAAAA CAAAGAAGGC GCGCTGAAAT TGATCAACTT CCTGCTGCGC CCGGATGTGG CAAAACAGGT TGCTGAAACT ATCGGTTATC CAACGCCAAA CCTTGCGGCG CGTAAGCTGT TAAGTCCAGA AGTGGCGAAC GATAAAACGC TCTACCCGGA TGCTGAAACC ATTAAAAATG GCGAATGGCA GAATGACGTT GGCGCAGCCA GCAGCATTTA TGAAGAGTAT TATCAGAAGC TGAAAGCAGG ACGTTAA
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Protein sequence | MKKWSRHLLA AGALALGMSA AHADDNNTLY FYNWTEYVPP GLLEQFTKET GIKVIYSTYE SNETMYAKLK TYKDGAYDLV VPSTYYVDKM RKEGMIQKID KSKLTNFSNL DPDMLNKPFD PNNDYSIPYI WGATAIGVNG DAVDPKSVTS WAYLWKPEYK GSLLLTDDAR EVFQMALRKL GYSGNTTDPK EIEAAYNELK KLMPNVAAFN SDNPANPYME GEVNLGMIWN GSAFVARQAG TPIDVVWPKE GGIFWMDSLA IPANAKNKEG ALKLINFLLR PDVAKQVAET IGYPTPNLAA RKLLSPEVAN DKTLYPDAET IKNGEWQNDV GAASSIYEEY YQKLKAGR
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