Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E0342 |
Symbol | ispA |
ID | 6272402 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 334251 |
End bp | 335150 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641724580 |
Product | geranyltranstransferase |
Protein accession | YP_001879130 |
Protein GI | 187730884 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 41 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACTTTC CGCAGCAACT CGAAGCCTGC GTTAAGCAGG CCAACCAGGC GCTGAGCCGT TTTATCGCCC CACTGCCCTT TCAGAACACT CCCGTGGTCG AAACCATGCA GTATGGCGCA TTATTAGGTG GTAAGCGTCT GCGACCCTTC CTGGTTTATG CCACCGGTCA TATGTTTGGC GTTAGCACAA ACACGCTGGA CGCACCCGCT GCCGCCGTAG AGTGTATCCA CGCTTACTCA TTAATTCATG ATGATTTACC GGCGATGGAT GATGACGATC TGCGTCGCGG TTTGCCGACC TGCCATGTGA AGTTTGGAGA AGCAAACGCG ATTCTCGCTG GCGACGCTTT ACAAACGCTG GCGTTCTCGA TTTTAAGCGA TGCTGATATG CCGGAAGTGT CGGATCGCGA CAGAATTTCG ATGATTTCTG AACTGGCGAG CGCCAGCGGT ATTGCCGGAA TGTGCGGTGG TCAGGCATTA GATTTAGACG CGGAAGGCAA ACACGTACCT CTGGACGCGC TTGAGCGTAT TCATCGTCAT AAAACCGGCG CATTGATTCG CGCCGCCGTT CGCCTTGGTG CATTAAGCGC CGGAGATAAA GGGCGTCGTG CTCTGCCAGT ACTCGACAAG TACGCAGAGA GCATCGGCCT TGCCTTCCAG GTTCAGGATG ACATCCTGGA TGTGGTAGGA GATACTGCAA CGTTGGGAAA ACGCCAGGGT GCCGACCAGC AACTTGGTAA AAGTACCTAC CCTGCACTTC TGGGTCTTGA GCAAGCCCGG AAGAAAGCCC GGGATCTGAT CGACGATGCC CGTCAGTCGC TGAAACAACT GGCTGAACAG TCACTCGATA CCTCGGCACT GGAAGCGCTA GCGGACTACA TCATCCAGCG TAATAAATAA
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Protein sequence | MDFPQQLEAC VKQANQALSR FIAPLPFQNT PVVETMQYGA LLGGKRLRPF LVYATGHMFG VSTNTLDAPA AAVECIHAYS LIHDDLPAMD DDDLRRGLPT CHVKFGEANA ILAGDALQTL AFSILSDADM PEVSDRDRIS MISELASASG IAGMCGGQAL DLDAEGKHVP LDALERIHRH KTGALIRAAV RLGALSAGDK GRRALPVLDK YAESIGLAFQ VQDDILDVVG DTATLGKRQG ADQQLGKSTY PALLGLEQAR KKARDLIDDA RQSLKQLAEQ SLDTSALEAL ADYIIQRNK
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