| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_2115 |
|---|
| Symbol | |
|---|
| ID | 6275481 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 2577029 |
|---|
| End bp | 2578309 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642614177 |
|---|
| Product | seryl-tRNA synthetase |
|---|
| Protein accession | YP_001878705 |
|---|
| Protein GI | 187736593 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0172] Seryl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00414] seryl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 0.0145556 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGACA TCCGTGTAAT ACGAGAAAAT CCGGAAGAAG TGAAAGCGCG GCTAAAGCCC
CGCAGCGGCG ACGCGTGGAA GCTTGTTGAT GACGTTCTGG CCTGCGATGA AGCGCGCCGC
AATGCCGAGA CGGAAAAGCA GGCCCTGCAG TCCGAGCGCA ATGCCACCTC CAAGCAGATC
GGCATGCTCA AGAAGAAAGG GGAAGACACT TCCTCCATTG AAGCGCGCGT GCGCGAAATC
GGGGACCGCA TCCGGGAACT GGACCGTGTC GCGGAGGAAA ATGCAGCCCA GCTCACCTCC
CTGCTGATGA ACATTCCCAA CCTGCCGCAC CTGGAATGCC CCGTGGGTGC GGATGAAACG
GCCAACCCGG AAATCAAGCT TTGGGGAGAA AAGCCCGCTA TTGAAAACCC GAAGGACCAT
GTGGAACTGG CCGCGAATCT GGGCATGATT TCCTTTGAAG ACGGAGCACG GATTACGGGC
TCCGGTTTTG TGGTGTACCG TGGGGCGGGC GCCCGTCTGG AACGTGCCCT GATCAACTTC
CTGCTGAATA CGCAGACCGT GGAAAACGGT TATCAGGAAG TGGGCGTTCC TTTTGTGGTG
AAAAGGGAGT GCATGGAAGG CACCGGCCAG CTTCCTAAAT TTGAGGAAGA CATGTACGGC
ACGGAAGACC AGCAGATGTT CCTGATTCCT ACGGCGGAAG TGCCGGTCAC CAACCTGTAC
CGGGATACCA TTTTACAGGA AAGCGACCTG CCCATCAAGA TGGCCGCGTA CACGCCCTGC
TTCCGCCGGG AAGCCGGAAG CGCCGGCCGC ATCAACCGCG GTATGATCCG CGTCCACCAG
TTTGACAAGG TGGAACTGGT GCAGATTTTA AAGCCGGAAG ACTCCTTCCG GGAGCTGGAA
GTGCTCCGCA GCCATGCGGA ATCCATCCTT CAAAAACTGG GGCTGCATTA CCGGGTGATT
GAGCTCTGCA CGGGAGACCT CGGTTTTTCC TCCGCCAAGA CGTATGATAT TGAAGTATGG
GCTCCGGGAC AGGGGCAGTA TCTGGAAGTT TCTTCCTGTT CCTGCTTTAC GGACTACCAG
GCGCGCCGCA TGCGCCTGCG TTACAAGGAT GCCGACGGCA AGAACCAGTT CTGCCACACC
CTGAACGGTT CCGGCACGGC TCTGCCGCGG CTGTATGTGG CCCTTCTGGA AACTTACCAG
CAGCCGGACG GCTCCATCCG GATTCCGGAG GCGCTTGTGC CGTATTTCGG CGCGGACTGC
ATCCGTCCTG AACAGGCTTG A
|
|---|
| Protein sequence | MLDIRVIREN PEEVKARLKP RSGDAWKLVD DVLACDEARR NAETEKQALQ SERNATSKQI
GMLKKKGEDT SSIEARVREI GDRIRELDRV AEENAAQLTS LLMNIPNLPH LECPVGADET
ANPEIKLWGE KPAIENPKDH VELAANLGMI SFEDGARITG SGFVVYRGAG ARLERALINF
LLNTQTVENG YQEVGVPFVV KRECMEGTGQ LPKFEEDMYG TEDQQMFLIP TAEVPVTNLY
RDTILQESDL PIKMAAYTPC FRREAGSAGR INRGMIRVHQ FDKVELVQIL KPEDSFRELE
VLRSHAESIL QKLGLHYRVI ELCTGDLGFS SAKTYDIEVW APGQGQYLEV SSCSCFTDYQ
ARRMRLRYKD ADGKNQFCHT LNGSGTALPR LYVALLETYQ QPDGSIRIPE ALVPYFGADC
IRPEQA
|
|---|
| |