| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1576 |
|---|
| Symbol | |
|---|
| ID | 6275556 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 1898780 |
|---|
| End bp | 1899238 |
|---|
| Gene Length | 459 bp |
|---|
| Protein Length | 152 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642613636 |
|---|
| Product | SsrA-binding protein |
|---|
| Protein accession | YP_001878177 |
|---|
| Protein GI | 187736065 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0691] tmRNA-binding protein |
|---|
| TIGRFAM ID | [TIGR00086] SsrA-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCCG ACATTTCCAC CAACAAAAAA GCCCGCCGGG ATTACGAAAT TCTGGACACC
TACGAATGCG GCATGGAACT CAAGGGAACG GAAGTCAAAT CCATCCGCGC CGGCAAGGTG
AATATTGCCG ATTCCTTCGC CAGGGTGGAA AACGGCCAGA TGCTCCTGTA CGGCTGCGAC
ATCCAGCCCT GGGAGACAGC GGGAGAATTC TTCCAGCACC AGGCGCGCCG GCCCCGCCGC
CTTCTTCTTC ATAAACGGGA AATTTTCAAA CTGGAACAGC AGACCTCCCA GAAAGGCTGC
TCCCTGGTAG CTCTCAAGCT GTATTGGAAA AACGGCAAGG TGAAACTGGC TCTAGGCCTG
GGCAAGGGCA AAACCCACCG CGACCAGCGC TACGATTTGA AAGCCCGCGT GGAAATGCGC
GAAGCCCAGC GGGAAGTGGC CCGCATCAAC CGCCGTTAA
|
|---|
| Protein sequence | MSSDISTNKK ARRDYEILDT YECGMELKGT EVKSIRAGKV NIADSFARVE NGQMLLYGCD
IQPWETAGEF FQHQARRPRR LLLHKREIFK LEQQTSQKGC SLVALKLYWK NGKVKLALGL
GKGKTHRDQR YDLKARVEMR EAQREVARIN RR
|
|---|
| |