| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1401 |
|---|
| Symbol | |
|---|
| ID | 6274642 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 1674401 |
|---|
| End bp | 1675468 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642613458 |
|---|
| Product | hydrogenase expression/formation protein HypD |
|---|
| Protein accession | YP_001878006 |
|---|
| Protein GI | 187735894 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0409] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR00075] hydrogenase expression/formation protein HypD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.416582 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGAGG AAGTTCGGCA GCTGATTGAA GAATTGCGCC ACGCTGTGAC GCGTCCGTGG
GCGGTAATGG AGGTATGCGG AGGCCAGACG CATGCGATTG CTTCTCTGGG GCTGGAGGAG
TTGCTGCCTC CCGGCCTGCG CCTGATTCAT GGCCCCGGCT GTCCGGTCTG CGTTACGGCG
GTGGAGTTGA TTGACCAGGC CGTGGAATTA AGCCTGAGGC CCGGCGTGGT TTTGTGCAGC
TACGGGGATA TGATGCGGGT GCCGGGCTCC CGCGGGGATT TGTTTTCCGC CAAGGCCGGG
GGAGGGAACG TGTTTTTGAT GTATTCTCCG CTGGAAGCGG TCGCTTATGC CGGAAGCCAT
CCGGATACGG AAGTGGTGTT TTTCGCCGTA GGTTTTGAGA CGACGGCCCC GGCTACGGCT
CTTGCCCTGC AGCAGGCCCG CATGCTGGGG TATGCCAATT TTTCCGTTCT CTGCGCCCAT
GTGCTGGTCC CCCCGGCTCT GGAATGGCTG ATGGACCAGG ATGAGGGAAG GCCGGACGCT
TTTTTGGCTC CCGGCCATGT CTGCGCCGTC ACGGGGGAAA TGGATTACGT GCGTTTGGCC
GCCCGTTACC GGACGCCCAT GGTGGTGACG GGGTTTGAGG CTCCGGACCT GCTCCGCGGC
ATTCTGATGT GCGTCCGCCA GCTGGAAGCC GGGGAATATG TAGTGCGGAA TGCGTACGGA
CGTTATGTGA AGCCCGGAGG GAACAGGGCG GCACAGGAAA GAATGAATGA AGTTTTTGAG
CCGGAAGACC GCCGTTGGCG CGGTCTGGGG CTGATTCCCG GCGGCGGCAT GAGGCTGCGC
CGTGAGTGGA ATGACATGGA TGCCGTTCTG CGTTTTGAAT GCGGAAAGGG GAGGCCGGGA
GCAGATGAAG CTTCCGGATG CCTGGCCGGG CAGGTGCTGA GGGGGCTGAT TCGTCCTGGA
GAATGCCCTT TTTTCGGATC GTCCTGCACG CCGCTGGCCC CGCTGGGGGC TCCCATGGTG
TCCGGGGAAG GGGCTTGCGC CGCTTATTAT CATTATAAAA GAAGTTGA
|
|---|
| Protein sequence | MQEEVRQLIE ELRHAVTRPW AVMEVCGGQT HAIASLGLEE LLPPGLRLIH GPGCPVCVTA
VELIDQAVEL SLRPGVVLCS YGDMMRVPGS RGDLFSAKAG GGNVFLMYSP LEAVAYAGSH
PDTEVVFFAV GFETTAPATA LALQQARMLG YANFSVLCAH VLVPPALEWL MDQDEGRPDA
FLAPGHVCAV TGEMDYVRLA ARYRTPMVVT GFEAPDLLRG ILMCVRQLEA GEYVVRNAYG
RYVKPGGNRA AQERMNEVFE PEDRRWRGLG LIPGGGMRLR REWNDMDAVL RFECGKGRPG
ADEASGCLAG QVLRGLIRPG ECPFFGSSCT PLAPLGAPMV SGEGACAAYY HYKRS
|
|---|
| |