Gene Amuc_1379 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_1379 
Symbol 
ID6274655 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand
Start bp1644002 
End bp1645114 
Gene Length1113 bp 
Protein Length370 aa 
Translation table11 
GC content61% 
IMG OID642613436 
ProductABC-2 type transporter 
Protein accessionYP_001877984 
Protein GI187735872 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.463817 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.000000727606 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGACTTCC TGATCAGAAT AGCCTCCCTC GTCAGAAAAG AACTGCTGGC CGTGCTCAGG 
GACAAAAAAA GCCGGCTGGC CCTCATCATC CCTCCCATCA TCCAGATAGC CATCTTCGGC
TATGCCGCCA CCATGAACGT CACCCGCGTG CCATACGCCG TGCTGGACAA AGACGGCGGA
GAAGCGGCCG CCCAGTACAT CGCGGACCTG GAAGGCACGG GAATCTTCCG GCGCCAGGCC
GCCGCGGCCA CGGAAAAAGA CATTGACCGC ATGATAGACA ACCGGGAAAT CGTCGTGGGG
CTCACCATTC CGCCGGATTT CTCCCGCAAC ATTCAGACGG GGAGGCCCGC ATCTCTCCAG
CTCATTGCGG ACGGGCGCAA CACGAATACG GCGGCCATCG CCCTCAGCTA CGGCCAGCAA
ATCGCTGCCG CCTACGGGGC GGAACTGCTC TCCAAAAACG GCGGCTCCTC CCCGGTGGAA
ACGGAATCCC GCGCCTGGTT CAACCCCAAC CTCATCACAC GCTGGTTCAT CGTTCCCGGC
CTCATCGCCG TGCTCGTGCT CATCAACTCC ATCCTCTCCG GCGCGCTCTC CATCGCCCGC
GAGCGGGAGG AAGGCACCTT CGACCAGCTT CTCGTCGCCC CATACACCCC GGGGGAAATC
CTGCTCGGCA AGGGAACAGC CTCCGTCGTC ACCGGAATCA TGCAGGCCGT CTTCGTGGTG
CTGGTTGCCA TGTTCTGGTT CCGCATCCCC TTCCAGGGCT CCGTCTGGCT GCTCTCCGCC
GCCCTGCTGC TCTTCATCGT CACGGCGGCG GCCATCGGGC TGTGCATTTC CTCCTTCGCC
CAATCCCTTC AGCAGGCTAT TGTGGGAACT TTCCTGCTGC TGGTGCCCAT GGTCATGCTC
TCCGGCTTTG CCACGCCCAT CTCCAGCATG CCGGAAATCT TCCAGGACCT CACGCTGCTC
AACCCCATGA GATACGGCCT GGAACTCATC CAGCGCATCT TTCTGGAAGG AGCCGGATTC
CTGGATCTCT GGCCGCTTTT CGCGGCCATC ATGGCCGTTA CCGTGGCGGC CGTCCTGGCA
GCCATCTTCT CTTTTCATCA TAAAATATCC TGA
 
Protein sequence
MDFLIRIASL VRKELLAVLR DKKSRLALII PPIIQIAIFG YAATMNVTRV PYAVLDKDGG 
EAAAQYIADL EGTGIFRRQA AAATEKDIDR MIDNREIVVG LTIPPDFSRN IQTGRPASLQ
LIADGRNTNT AAIALSYGQQ IAAAYGAELL SKNGGSSPVE TESRAWFNPN LITRWFIVPG
LIAVLVLINS ILSGALSIAR EREEGTFDQL LVAPYTPGEI LLGKGTASVV TGIMQAVFVV
LVAMFWFRIP FQGSVWLLSA ALLLFIVTAA AIGLCISSFA QSLQQAIVGT FLLLVPMVML
SGFATPISSM PEIFQDLTLL NPMRYGLELI QRIFLEGAGF LDLWPLFAAI MAVTVAAVLA
AIFSFHHKIS