| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1310 |
|---|
| Symbol | |
|---|
| ID | 6275501 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 1588598 |
|---|
| End bp | 1589077 |
|---|
| Gene Length | 480 bp |
|---|
| Protein Length | 159 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642613366 |
|---|
| Product | 17 kDa surface antigen |
|---|
| Protein accession | YP_001877915 |
|---|
| Protein GI | 187735803 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3133] Outer membrane lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 0.13567 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACAG CTTCCATTCT TACCATCGGC TGTGCAGCCA TGGCGCTGTC CATTACTTCC
TGCACCAACT TCGGTTCCCC GAACACCTAT AACCTGAACG AAATCGGCGG AGCCCAGGAA
ACCTATACCG GCACGGTCAC CAGCGTGGAA AACGTCAAGA TCCAGGCCAA TAACGCCAAC
ACCGGCACCG GAATCGGCGC CGTGGCGGGC GGGTTGACCG GCGCCATGTT CGGGGGCGGC
AACGCCAAAT TCGCGACGGC GGCGGGCGGC GCCATTCTGG GCGGCATTGC CGGCAACCAG
ATTGACAAGG CCGTCAACAA CACGACCGGG GAACGCATCA CCGTGCGTCT GGACCAGAAG
AGGAACGGCA CCCGCAACTA CACGGTCGTC CAGGTCGCCA GCAGGAACAA CCCGATTCAG
GTCGGGCAGC GCGTGCGCGT GATCATCGGC AACAACGGTT CCCGCGTGCT GGCCTATTAA
|
|---|
| Protein sequence | MKTASILTIG CAAMALSITS CTNFGSPNTY NLNEIGGAQE TYTGTVTSVE NVKIQANNAN
TGTGIGAVAG GLTGAMFGGG NAKFATAAGG AILGGIAGNQ IDKAVNNTTG ERITVRLDQK
RNGTRNYTVV QVASRNNPIQ VGQRVRVIIG NNGSRVLAY
|
|---|
| |