| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1248 |
|---|
| Symbol | |
|---|
| ID | 6275405 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 1498142 |
|---|
| End bp | 1499230 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642613305 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_001877854 |
|---|
| Protein GI | 187735742 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA ACAGCAGAAT CTTTGTGGCC GGACACCACG GCCTCGTCGG TTCCGCCATC
TGGAAATCCC TGGAAGACAA AGGCTATTCC CACCTGATTG GCCGGCCGCA CAAAGAACTG
GATCTGGAAG ACCCTGCGGC CGTCCGGGAG TTTTTTGACC GGGAAAAGCC GGAATACGTC
TTTCTGGCAG CGGCGTTTGT GGGCGGCATC ATCGCCAACT CCCGCTACCG GGCGGACTTC
ATCTTCCGCA ACCTTCAGAT TCAGCAGAAC GTCATCGGGG AAAGCTTCCG GCATGGCGTA
TCCAAGCTCC TCTTCCTGGG GAGCACCTGC ATCTACCCGC GCGAAGCTCC CCAGCCCATG
AAGGAAAACG CCCTGCTCAC CTCCCCGCTG GAATACACCA ACGAACCCTA TGCCATTGCC
AAAATAGCAG GGCTGAAAAT GTGCGAAAGC TTCAACCTGC AATACGGCAC CAACTACATC
GCCGTCATGC CTACAAATCT GTACGGCCCC AATGACAATT TCCACCTGGA AAACAGCCAC
GTGCTGCCCG CCATGGTACG CAAGATACAC CTGGCCAAGT GCCTGATGGA GGGAGACTGG
AACGCCGTGC GGAAAGATCT GAACGCGCGC CCAGTGGAAC AGGTGGACGG CACGGCTGAA
GAAAAGGAAA TCCTGGCCGT GCTGGCCAAA TACGGCATTA CCCCCGGTTC CGTGGAACTG
TGGGGTACGG GAACTCCCCT GCGAGAGTTC CTGTGGAGCG AAGACATGGC GGACGCCTGC
GTCCATGTGA TGGAGCAAGT GGATTTCAGC CAGCTGCAAG AAGGAGGAAG GGAAGTGCGG
AACTGCCACA TCAATATCGG AACCGGGAAA GAAATCTCCA TCGGCGGACT GGCCCGCCTG
ATTGCCGCTA CGGCAGGGTA CCGGGGAAAT CTGGCGTTCA ACGCAGACAA GCCGGACGGC
ACCATGCGCA AGCTGACGGA CGTCTCCAAG CTGCACTCCC TGGGCTGGAA ACACCGGGTG
GAGCTGGAAG AGGGAGTGGA ACGCATTTAC CGGTGGTATC TGAGCCGGAT GGAAGCCGAC
GGCAACTGA
|
|---|
| Protein sequence | MKKNSRIFVA GHHGLVGSAI WKSLEDKGYS HLIGRPHKEL DLEDPAAVRE FFDREKPEYV
FLAAAFVGGI IANSRYRADF IFRNLQIQQN VIGESFRHGV SKLLFLGSTC IYPREAPQPM
KENALLTSPL EYTNEPYAIA KIAGLKMCES FNLQYGTNYI AVMPTNLYGP NDNFHLENSH
VLPAMVRKIH LAKCLMEGDW NAVRKDLNAR PVEQVDGTAE EKEILAVLAK YGITPGSVEL
WGTGTPLREF LWSEDMADAC VHVMEQVDFS QLQEGGREVR NCHINIGTGK EISIGGLARL
IAATAGYRGN LAFNADKPDG TMRKLTDVSK LHSLGWKHRV ELEEGVERIY RWYLSRMEAD
GN
|
|---|
| |