| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1231 |
|---|
| Symbol | |
|---|
| ID | 6274742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 1480161 |
|---|
| End bp | 1480901 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642613288 |
|---|
| Product | DNA repair protein RadC |
|---|
| Protein accession | YP_001877837 |
|---|
| Protein GI | 187735725 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2003] DNA repair proteins |
|---|
| TIGRFAM ID | [TIGR00608] DNA repair protein radc |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 0.375575 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTACC GCAAACTTCA GGAACTGCCC TCTCAGTCTC TGCCCAGAGA AAAATTGCTC
CGCCAAGGAA GGCACAGCCT CAGCAACGCG GAACTGCTTG CTATCTTTCT CCGAATGGGG
ATCAAGGGGA AAAATGTGTT GGACATGTCC TCGGATCTGA TTCAGTCTGC TGGCTCTCTA
GATGCCCTAG CTCATATGGA AGCTGCTGAA ATAGCGAACA TTTGCAAGGG AATAGGCATG
GCTAAAGCCG CTACGCTGAG CGCTGCCTTT GAACTGGGAG CGAGGGCTCT CCGTGAAACT
CTGTCACGTC AACCCATTCA AACACCGGAA GATGTCTATG ATTATCTGAC TACAGCCATG
CGCTGGAAGG AAAAGGAGAC GGTGCTCGTT CTGCTGCTGG ATACCAAGTG CCGCCTCATC
AAACCCGTGG AAATATCCAG CGGGACCTTG AACGAATCCA TTGCTCATCC ACGTGACATA
TTACGCCCCA CTGTCATTCA TAACGCCTAT GGCTTCATCC TTGCCCACAA TCATCCCAGT
GGAAATCCAG CCCCCAGCCG TACGGACGAC CTCCTGACCG AACGCGTGCG GGAATGCTCC
AAATTATTAG GCGTTCGTTT TCTGGATCAT GTAATCATTG GTAAACCGAC CGAAACAACC
AACAAAAATT ATTATAGTTA CAACCATCCT GGCGGAGACC GCCTTAAAGA CCCCGGTCAA
GAACGCACCC TCTATCACTG A
|
|---|
| Protein sequence | MTYRKLQELP SQSLPREKLL RQGRHSLSNA ELLAIFLRMG IKGKNVLDMS SDLIQSAGSL
DALAHMEAAE IANICKGIGM AKAATLSAAF ELGARALRET LSRQPIQTPE DVYDYLTTAM
RWKEKETVLV LLLDTKCRLI KPVEISSGTL NESIAHPRDI LRPTVIHNAY GFILAHNHPS
GNPAPSRTDD LLTERVRECS KLLGVRFLDH VIIGKPTETT NKNYYSYNHP GGDRLKDPGQ
ERTLYH
|
|---|
| |