| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1158 |
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| Symbol | |
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| ID | 6273859 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Akkermansia muciniphila ATCC BAA-835 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010655 |
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| Strand | + |
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| Start bp | 1388421 |
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| End bp | 1389017 |
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| Gene Length | 597 bp |
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| Protein Length | 198 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 642613209 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_001877764 |
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| Protein GI | 187735652 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02984] RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.00528384 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGCAAG CAGAAACAGC ATGCCCGGAT GCCTGGGGAA GCCATTTCCT TGAATACCGG
GGAAGGCTTC TTGCCCTGGC CCGGAGGAAT TTGAATCCGG TTCTTGCCCG GCGCGTTTCG
GCGGAAGATG TGGTTCAGGA GGCTCTGCTG GCAGCCTGCG GGAAAATGGC TTTTTTTGAA
AACAATCCGG AGATTCCTGT CTATTTCAAA CTGCGGACGA TTCTGTTCCA GACCCTTACG
GCTATGGAAA GGAAGCATCT GCAATGCCTC AAGAGAGACG CCTGCAGGGA AGTGAATGTG
ACGGATGACG GCGTGGGGCC CGCTGCCCGG TTGGATTGGA ACCGGTTTGC AGATACCGTG
ACCGGGCCTC TTACCCGTGC CGTCAGGGCG GATCGTTATA CATTGCTCCG GAAAGCGGTC
GAGGCGCTGC CCGAAAACGA TCGGCAGATT CTTGAACTCC GCCATTTTGA CGACATGTCC
AATGCGGATT GTGCCGAAGT CCTGCATATT GGGCCGAAAG CCGCAAGCAT CCGCTATGTG
CGGGCGCTGC AGCGGCTTCG GAAGCAGCTG ATGGAGTTAA CCGAGTTTCA GCCATGA
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| Protein sequence | MTQAETACPD AWGSHFLEYR GRLLALARRN LNPVLARRVS AEDVVQEALL AACGKMAFFE
NNPEIPVYFK LRTILFQTLT AMERKHLQCL KRDACREVNV TDDGVGPAAR LDWNRFADTV
TGPLTRAVRA DRYTLLRKAV EALPENDRQI LELRHFDDMS NADCAEVLHI GPKAASIRYV
RALQRLRKQL MELTEFQP
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