| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1075 |
|---|
| Symbol | |
|---|
| ID | 6274033 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 1284186 |
|---|
| End bp | 1286084 |
|---|
| Gene Length | 1899 bp |
|---|
| Protein Length | 632 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642613126 |
|---|
| Product | ATP-dependent DNA helicase, RecQ family |
|---|
| Protein accession | YP_001877682 |
|---|
| Protein GI | 187735570 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0514] Superfamily II DNA helicase |
|---|
| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.0035291 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTCCT CTGCTCTGGA AGACACGCTG CGTTTATTCG GCAAGGAACG GTTCCGTCCC
ATGCAGAGGG ATCTGGTGGA GTGCGCGCTG GAGGGCCGTT CCTGCATCGG TATTTTGCCT
ACGGGTTCCG GCAAGAGCCT TTGCTATCAG ATTCCGGCGG TTCTGGGAAA TGGGCTGACG
GTTGTGGTTT CTCCGTTGAT TGCCCTGATG CGCGACCAGG TGGCGGGGCT GGAAAAACTG
GGCGTGGCCG CCGCCAGGTA TGATTCGACC CTGGCGGAAG AAGATAAGGT CGCCCTGATG
GACAGATTGA AGTCCGGAGG CGTCCGCCTT CTGTTTGCCG CTCCGGAGTC TCTGGAATCC
CCGTGGATTC AGCAGGTCAT GGAGCTTGTT CCCCCCGGCT TGTTCGTGGT GGATGAGGCT
CATTGCCTTT CGGAATGGGG GCACAGTTTC CGTCCGGATT ATCTGGGGCT GCCCGTTTTT
TTCAGAAAGC ACGGGTTCCG CAGCGTCATG GCGTTGACGG CCACGGCTAC GGAGCAGGTG
TGCCGCGATC TGGCCGGCCT GTTTGGCGTG AGTGATGAAT GTATTTTCCG GGCTGCGCCG
TACCGTGCGA ATATCTTCCG CCAGGTGGAA ACGTTGAAGG ATCAGGATAA AACCGCGCGG
CTGGTTGAAT TGTTGAAAGA GGGAGGCCGC CGTCCTGCCG TGGTGTACAC GCGGACCCGC
AAAGATGCGG AAAACCTTTC CTACGAATTG GGAAAAGCCG GTTTCTCCGT CAAGTCCTAC
CATGCGGGCA TGCCCCCGGA GACGAGGGGG CTGGTTCAGG ATGAGTTTCT GGCAGGTACG
GCGGACGTGC TGGTGGCGAC GATTGCCTTC GGCATGGGGA TTGACAAGCC GGACGTGCGT
TCCGTGGTGC ATTACCATCC CCCCGCCAGT CTGGAGGCGT ATGTTCAGGA ATCCGGCCGT
GCAGGACGCG ACGGCCTTCC TTCCTTCAGC CTGGTGATGT TGTCCGCCCG CGACAGCGTG
GCCGTAGTCA ACCGGCTGCA TGCGGCGGAG CCGGACCGGC ACGGCATGAA AGGGCTGGTA
TCTCTGTTGT CCCGCAGGGG GGAGCACATT GTTTCCCTGT ATGAGGCTTC TTCCGTTTAT
GATTTGCCGG ATGTGGCGGT GGACCGGATG CTGTTTGACC TGAAACGTTC CGGTTCCGTA
CGGGAGAAGG GGACGGGGTT CAAGTATTAC AGGGTGCGCC CTCTGTTCCG GATGGAGGAA
ATTCTGTGCG GCCGCGGCGG GGAGGAATGC GCCCGGCTGC AATGGATGGA TATGCGCCGG
CAGGGAGAGG TGGAGGATCT GGCTGTGGAA TGGGGAATTT CATGGGAAGA AGCCGCCGCC
TGGCTTGGTG ACCTGGCTCT TTCCGGGGAA TGGAAAGTGG AGCTGCGCCA GGCAGCCCTT
CATCTGTATT CGGAAGGATT TGACGCGGAA GAGGCTGCGG AGGAATTTGA GCAGTATTTT
TCCAGATCCC GGCTGAACGG GCTGGAACGC TGGAAAACCT GCGTTTCTAC GCTGACGTCT
TCCGCCTGCC TGAATAGAAG CCTGGATGCC TATTTCGGTT TCCGGGACCT GTCCGGGCCT
TGCGGGCATT GTCCTGCGTG CTGTGGGATG TTGCCTGCGG CCATGGAAGA AGAGGAACTT
CCCCCGTTAC CGGAAGAGCT GCGCTCCGCC GTCATGGAGC TGGCGGGGCA GAGGAAGCCC
GCGCTGGCCC GCCCTTCCCA GTTGGCGCGC TTTTTGCTGG GACTGGCTTC TCCCGCGGCC
ATGCGCGCCC GGTTGTGGAG CCATCCTCTC TATGGGGCGC TGGCGGACAG GAAATGGGAG
GATGTGTGGA TTGAGGCGCA TGCCCTGTCG GGTAGTTAG
|
|---|
| Protein sequence | MLSSALEDTL RLFGKERFRP MQRDLVECAL EGRSCIGILP TGSGKSLCYQ IPAVLGNGLT
VVVSPLIALM RDQVAGLEKL GVAAARYDST LAEEDKVALM DRLKSGGVRL LFAAPESLES
PWIQQVMELV PPGLFVVDEA HCLSEWGHSF RPDYLGLPVF FRKHGFRSVM ALTATATEQV
CRDLAGLFGV SDECIFRAAP YRANIFRQVE TLKDQDKTAR LVELLKEGGR RPAVVYTRTR
KDAENLSYEL GKAGFSVKSY HAGMPPETRG LVQDEFLAGT ADVLVATIAF GMGIDKPDVR
SVVHYHPPAS LEAYVQESGR AGRDGLPSFS LVMLSARDSV AVVNRLHAAE PDRHGMKGLV
SLLSRRGEHI VSLYEASSVY DLPDVAVDRM LFDLKRSGSV REKGTGFKYY RVRPLFRMEE
ILCGRGGEEC ARLQWMDMRR QGEVEDLAVE WGISWEEAAA WLGDLALSGE WKVELRQAAL
HLYSEGFDAE EAAEEFEQYF SRSRLNGLER WKTCVSTLTS SACLNRSLDA YFGFRDLSGP
CGHCPACCGM LPAAMEEEEL PPLPEELRSA VMELAGQRKP ALARPSQLAR FLLGLASPAA
MRARLWSHPL YGALADRKWE DVWIEAHALS GS
|
|---|
| |