| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0598 |
|---|
| Symbol | |
|---|
| ID | 6274701 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 707473 |
|---|
| End bp | 708168 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642612649 |
|---|
| Product | Ribonuclease III |
|---|
| Protein accession | YP_001877216 |
|---|
| Protein GI | 187735104 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0571] dsRNA-specific ribonuclease |
|---|
| TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 77 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCACA CCGCGCTGGA AGACAAGCTG GGTTACCGTT TCAACAATCC GGATCTGCTC
GTTCAGGCCC TTACCCACCC CAGCACGGAC AGCAAGCCGG AAACGCGCCG GGCGTATGAA
CGGCTGGAAT TCCTGGGAGA CGCCATCCTG CAGCTGGCCG TCACACAGTA CCTTTACCAC
CACATGCCCC AATCCCCGGA AGGGGAACTA ACCCAGCTGC GCGCCCGGAC CGTCAGCCGC
GCCAATCTGG GCAAATACGG CTTTATCCTG GGGCTGGATA AACACATTGC CCTGGGAAAA
GGGGAGGAAC GGGCCGGCGG ACGGGGCAAA AATTCCATCA TCGCCAACAC ATTTGAATCC
GTCTTCGGAG CCATGTCCCT GGATTCCGAC TATGAAACGG CCAAGGCTGT AGCCCTGCGC
GTCCTCCATG AAGCTCTGGA TTCCGCGGCC AGCCATCCCA AGGAAATCAA CCCCAAGGGG
GAACTCCAGG CTATCCTTCA GGACATCCTG CCCGAAACTC CTTCCTATGA AACGGAAGAA
AAAGGGCCGA GAGACGCCGA AAACCGTTTT GAATCCCGCG TTTTCTGGCA TGGTCACGCC
ATTGGAGCCG GTTCCGGGGC CAGCAAGAGG AAGGCGGAAG TGGCCGCCGC CGCAGACGCC
CTGGACGCCA GGGCATGGCT CCGCATGACC TTGTAA
|
|---|
| Protein sequence | MNHTALEDKL GYRFNNPDLL VQALTHPSTD SKPETRRAYE RLEFLGDAIL QLAVTQYLYH
HMPQSPEGEL TQLRARTVSR ANLGKYGFIL GLDKHIALGK GEERAGGRGK NSIIANTFES
VFGAMSLDSD YETAKAVALR VLHEALDSAA SHPKEINPKG ELQAILQDIL PETPSYETEE
KGPRDAENRF ESRVFWHGHA IGAGSGASKR KAEVAAAADA LDARAWLRMT L
|
|---|
| |