Gene Amuc_0549 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_0549 
Symbol 
ID6275271 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand- 
Start bp649211 
End bp649849 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content60% 
IMG OID642612599 
Productendonuclease III 
Protein accessionYP_001877168 
Protein GI187735056 
COG category[L] Replication, recombination and repair 
COG ID[COG0177] Predicted EndoIII-related endonuclease 
TIGRFAM ID[TIGR01083] endonuclease III 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value0.0850765 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATACGG AAAAACGGGC TTCCATTGTC CAGGAGGAAC TCATGTCCCT GTACGGGGCT 
CCTCCCATTC CCCTGGTGCA CCGCGACGCT TACACGCTGC TGGTGGCGGT TCTCTTGTCT 
GCCCAGTGTA CGGACAAGCG GGTGAATCTG GTGACCCCTG CTCTGTTTGC CCTGGCCTCC 
ACCCCGGAGG AAATGGCCCG GCAGGATGTG GAAGCGGTCC GGGAAATTGT GAGGCCCTGC 
GGCCTCTCGG AAAGGAAGGC ATCCGCCATC GTGAACCTCA GCCGCATCCT GGTGGAAAAA 
TATGAGGGAA AGGTTCCTTG CGACTTTGCT GCTCTGGAGT CTCTTCCGGG GGTGGGGCAT 
AAAACGGCTT CCGTCGTCAT GGTTCAGGCC TTTGGCGTTC CCGCCTTTCC GGTGGATACC 
CACATTTTCC GCCTTTCACG GCTGTGGGGG CTGAGCACGG GAAAAACGGT GGAAGCCGTG 
GAACGCGATT TGAAAAGCCT TTTCCCTGAA AAATTGTGGG GAGATCTTCA TCTGCGTATT 
GTCTTGTACG GTCGTGAATA TTGCCCTGCG CGGGGATGCG GGGGGCGCTG CCCCATCTGC 
AGCCGGCTGG CCCGGGAGAG CGGCTGCGCA GGCGTCTGA
 
Protein sequence
MNTEKRASIV QEELMSLYGA PPIPLVHRDA YTLLVAVLLS AQCTDKRVNL VTPALFALAS 
TPEEMARQDV EAVREIVRPC GLSERKASAI VNLSRILVEK YEGKVPCDFA ALESLPGVGH 
KTASVVMVQA FGVPAFPVDT HIFRLSRLWG LSTGKTVEAV ERDLKSLFPE KLWGDLHLRI 
VLYGREYCPA RGCGGRCPIC SRLARESGCA GV