| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0345 |
|---|
| Symbol | |
|---|
| ID | 6274975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 406656 |
|---|
| End bp | 407249 |
|---|
| Gene Length | 594 bp |
|---|
| Protein Length | 197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642612396 |
|---|
| Product | Exonuclease RNase T and DNA polymerase III |
|---|
| Protein accession | YP_001876965 |
|---|
| Protein GI | 187734853 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0358305 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 0.16138 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCTGC TTTCGGATAC AATCGGCGGC CTGCATTTCG CCGCCATTGA TTTTGAATCC
GCCGGAGCGG CCCGGGGGGA GACGGACCAG CCCGTCCAGA TAGGCATAGC CGCATGTCCC
CGCCTGGAGG ACGAGCCTGA GTTGTGGACT TCCTATATTG CGGTGGAGAA GCCGGTTTTA
TGGTCCGCCT CCCAGGTGCA CGGCATTACT ACGGAGATGC TGGCGGATGC CCCGTCTTTT
CCCTCCCTGT GGCCGGAGAT ACGTTCCCGG CTGGGGCAGG CCGTGGTGGT GGGGCATAAT
CCGGCCACGG AACGGAAGTT CCTGCGCCGG TTTCCGGGCC ACGGCTTCGG CCCGTGGCTG
GATACGCTGG CCCTGGGCCG GATGTGCGTT CCCGGTCTGG CGGATTATTC CCTGTCTTCT
TTGTGCGGCG CCCTGGGGCT GACTTGTTCC GTGGAGGCTC TGCTTCCTGC GCGCCGATGG
CATGACGCTT TGTATGATGC GCTGGCAAGC CTGCTGATTG TCCGTTTTCT GGTAAAGGAA
TTGAATTTGT CCGGCCAGCC TCTGGATGTA TTGGGCAAGG CGGTGAGAAC ATGA
|
|---|
| Protein sequence | MPLLSDTIGG LHFAAIDFES AGAARGETDQ PVQIGIAACP RLEDEPELWT SYIAVEKPVL
WSASQVHGIT TEMLADAPSF PSLWPEIRSR LGQAVVVGHN PATERKFLRR FPGHGFGPWL
DTLALGRMCV PGLADYSLSS LCGALGLTCS VEALLPARRW HDALYDALAS LLIVRFLVKE
LNLSGQPLDV LGKAVRT
|
|---|
| |