| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0336 |
|---|
| Symbol | |
|---|
| ID | 6274996 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 394920 |
|---|
| End bp | 397142 |
|---|
| Gene Length | 2223 bp |
|---|
| Protein Length | 740 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642612387 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001876956 |
|---|
| Protein GI | 187734844 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.000135521 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTTAT CCAACATGAA TACCCCCCGC CATCGCCGCC AGGGGCGCGG CCTGCACCGT
GCTGCCGCCA TTGGGAGCCT GCTTGTTCTC GGACAATCTG CCTATGCCGA GACAAAGGCC
GCCGCCGCAG AGGAAGGCGT GCAGGAAATG CCGGAACGCG TGATGACCAT CCGTTCCAGG
TCCCTGCGGG CGGAAACGGT CAGTTCCGCT ACTCTCACGA ACATGAAGAC GGAGGAAGTT
CCGCAAACGG TAAACGTCAT TACAAGGGAC CTGATGGATT CCAAGGGGTC CGATTCCCTG
GTGGAAGCGC TGCGTATGGA TTCCTCCGTC AATACGGGTG GGGACATGCT TTTGTCCCGT
ACGGCGGACC AGTACACCAT CCGCGGCTTT GCCGGCAGTG ATGTTCAGAT CGGCAATATG
CCCCTCCCGC GAGGCATGGG GTATGGCATG GATACGTCCC TGATAGAAAA TATTGAGATT
GTCAAAGGCC CCATCGGTTC CATTTCCGGC GGTCAGACCA GTACGCTCGG GGCATACGGC
GCCGGCGGTT CCATCAACCT GATCCTGAAG GAGCCTGATT TCCTGGAACG GACGGAGTTG
ACGGCTTACG CCCGCCTTTC CCATCACGGG CAGAAATACC GCGCAACGAT TGACGATACC
CGGTACAGGG GGGATGAAAC GAATGGATTT GCCCTGCGCA CGGTGGTAGC CGCCGAGTAT
GAACGCCCGT TCTGGCTGAG CAACGGAGCC AACGGAGGCC AGAAGTACAC GGTGTCCCCC
ATTTTCCGCT GGCAGCATGA TTCCCGCACC AAGACGGTGC TGACGACCAG TTTCCAGTAT
CAGAATTCTC CGACGACCAT GGGCATCCCT GTGCTGGGCG GCCATTTTGT GGGGCCGTAT
GACGCTTGGT ACGGTTCTCC GAGCGGAAGG CTTAATTCCA AATCCCTGCT GGCGATGCTG
GATTTCGAAC GCAAGCTGGA AAAGATATGG ACGATCCGCA TTGGCGGCGG TATTGGGTAC
AGCGATGTGG ACTATAATGT CTGGGGCATT TCCTCTTCCG CTGGGAGAGG AACCAGCACG
GCGGATTATT ACAACCAGAT GATTGCTTCC GGAAAGGCCA AATATGAAGC CGCCTGGAGC
GACGAGTGGA ATATCAACTG GAATTTTTAT TCCAACGCAC TGGCGGAATT TAAGACCGGG
CAGGTGAAGC ATGAAGCCCT AATGGGCGTT TCTTACACGG GGAGCAGCAC TTATGGAGAC
GGTTCCAGCC TGGTGACAAA CGCCACCGCA AATACGAACG GCTATTTTTC CCTGTACAAT
CCTCCTCCTT TTTTCCCTGC AGGGCGCGAT TATTCCGGCG CCAATGCGAC GGATACCGTG
GTGCAGAGGG CTGGTTTTCT GCTGCAGGAT GTCCTCAGTT ATGGACAGTG GCGTTTTCTG
GCCGGCGTTC GCGGTGACGC GCATTTCAGC CTGGACAATA ATTATGCGTT TGCGTGGAGC
CCCCGCTTCG GAATTACCCG CATGTTCGGC GAACGCGTAG CGTTGTTCGC CAACGCAGCC
CGTACCTCCG CCCCCAACTT CGGGTATCTG GATGAAAACG GGAAGGAATT GACCGATTCC
TGGCGTACGG ACCAGATGGA ATTCGGGTTC CGGGTCAGCC CGGTTGATAA GGTGTGGTTT
TCCGCTTCCT GGTTTGACAT CATCCAGAAT AATACGCCTG TTGCCATAGA CGGATATACC
AACCGGTACT ATTCGGACGG CTCCAAGAGG GCGGAAGGCG TGGAACTTTC CCTGAACGGG
GAAATAACCA AGAATTGGAG TTCCTATCTT TCCTACACCT ACACCCGCAC CAAGAACCGG
ACCACCGGGG AAGTGTATCC CACGATTGCT CCGAATGCTC TGGCCCTCTG GCAGAAGTAC
CGCATTGACG GAGGGTTGCT GAACGGTACG GTGCTGGGCT TGGGCTACCG CTGCAAGGAT
TCCTATTACG CTACGTTCCG GGGCGCAAAA ATTGCGGACA ACTACACCAT CCCCTCCTAT
AGCGTATTCG ACTTTACGGT GGAAATCCCC CTGCCGGAAT CCAAATGGCT GAAAGATGCC
ACGCTGAGGC TGGCTGTGTA TAATATCTTC GATAAAAAGT ACGTGCAGTC CACCCGCCAT
GCCGTGCAGT GCACGGTGGG AGAGCCGCGC ACGTTTGAAG TAGGCCTGAA GACCACGTTT
TAA
|
|---|
| Protein sequence | MRLSNMNTPR HRRQGRGLHR AAAIGSLLVL GQSAYAETKA AAAEEGVQEM PERVMTIRSR
SLRAETVSSA TLTNMKTEEV PQTVNVITRD LMDSKGSDSL VEALRMDSSV NTGGDMLLSR
TADQYTIRGF AGSDVQIGNM PLPRGMGYGM DTSLIENIEI VKGPIGSISG GQTSTLGAYG
AGGSINLILK EPDFLERTEL TAYARLSHHG QKYRATIDDT RYRGDETNGF ALRTVVAAEY
ERPFWLSNGA NGGQKYTVSP IFRWQHDSRT KTVLTTSFQY QNSPTTMGIP VLGGHFVGPY
DAWYGSPSGR LNSKSLLAML DFERKLEKIW TIRIGGGIGY SDVDYNVWGI SSSAGRGTST
ADYYNQMIAS GKAKYEAAWS DEWNINWNFY SNALAEFKTG QVKHEALMGV SYTGSSTYGD
GSSLVTNATA NTNGYFSLYN PPPFFPAGRD YSGANATDTV VQRAGFLLQD VLSYGQWRFL
AGVRGDAHFS LDNNYAFAWS PRFGITRMFG ERVALFANAA RTSAPNFGYL DENGKELTDS
WRTDQMEFGF RVSPVDKVWF SASWFDIIQN NTPVAIDGYT NRYYSDGSKR AEGVELSLNG
EITKNWSSYL SYTYTRTKNR TTGEVYPTIA PNALALWQKY RIDGGLLNGT VLGLGYRCKD
SYYATFRGAK IADNYTIPSY SVFDFTVEIP LPESKWLKDA TLRLAVYNIF DKKYVQSTRH
AVQCTVGEPR TFEVGLKTTF
|
|---|
| |