| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0316 |
|---|
| Symbol | |
|---|
| ID | 6275055 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 373437 |
|---|
| End bp | 374210 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642612370 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001876939 |
|---|
| Protein GI | 187734827 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 0.474202 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACAC GCACCTTCCT GCTGGCAGCC CTTGCGCTTG CCCTTCTTCC CGTCTCCGCG
CGGCAATCCC TGCCGGCCTC CCCTTCCCCT GCCTGGATTC AGGAATTCAA CAACCTGCCG
GAAACAACCA GAAAAAGCTA TATAGCCCAA TTCCGCAAAG CGGAACAGCT CTTTGCCCAG
AAAAGAATCA TGGAATGTCT TTTTTCCCTC ATGGAGCTGG AAAAACTTTA TGCCGGAAAT
CCGGGCTTAT ACAACCTCCG CGGCGCATGC TACATTGAAA TCCGCAATAT CGAAAAAGCC
CTGGAAAATT TTGAAAAAGC CCAGAAACTG GATCCCTCCA ACCTCACCAT CCAGTTCAAC
CTGGCGGAAG CGCATTACGT CAATCACGAC TATTCCAGGG CTCTGAAAGC GTTCACGGAA
CTCCTTCTCC CCTTCAAGGA CAATCCCGGC ATGACGCCCC TGCTGCAATT CAAGCGTTAT
ATCTGCGCCC GCAAACTGGA TAACCAGCCC CTTGCTGCGG AATTGGAAAA GCTGTACGGC
CCGATGGATG ATACGCCATA CTACTACTGC ACCCAGGCCA TCCTCAAACT GATGGAAGGG
GACAAGGAAG CCGCCCAGGG ACAGCTCCTT TCCGCCATCC GCATCTACGG AGGCACCAGC
GCCATCCAGG CCTTCACGGA CGCCATGACG GAGGCTGGCA TCCTTCCCTC CCCCTATGGG
CAAACCGTCC CAACCGAACA GCCGGTAAAA ACCGGACTGG AAAAACGCCG TTAA
|
|---|
| Protein sequence | MKTRTFLLAA LALALLPVSA RQSLPASPSP AWIQEFNNLP ETTRKSYIAQ FRKAEQLFAQ
KRIMECLFSL MELEKLYAGN PGLYNLRGAC YIEIRNIEKA LENFEKAQKL DPSNLTIQFN
LAEAHYVNHD YSRALKAFTE LLLPFKDNPG MTPLLQFKRY ICARKLDNQP LAAELEKLYG
PMDDTPYYYC TQAILKLMEG DKEAAQGQLL SAIRIYGGTS AIQAFTDAMT EAGILPSPYG
QTVPTEQPVK TGLEKRR
|
|---|
| |