| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0263 |
|---|
| Symbol | |
|---|
| ID | 6275214 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 326709 |
|---|
| End bp | 327206 |
|---|
| Gene Length | 498 bp |
|---|
| Protein Length | 165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642612318 |
|---|
| Product | protein of unknown function UPF0054 |
|---|
| Protein accession | YP_001876887 |
|---|
| Protein GI | 187734775 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0319] Predicted metal-dependent hydrolase |
|---|
| TIGRFAM ID | [TIGR00043] metalloprotein, YbeY/UPF0054 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0104148 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 0.500698 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCGA ATCTTGAACT CTACAATCAT TTGGGGGAGG GGAGGCTCAG TTCATCCGTT
ACGGATGCCC TGATTGGAGC CTTGGAGAGT TGTCTTCCGT CCGTGTTGGC GTTGCCTGAA
GGTCCTGTCC CCGTACTTTC CGGATTGGAT GAAGTAGAAA TCAGCGTGGT TTCCGATGAC
GTCATCCGGG ATGTGCATGC CCGTTTTTTG AATGATCCGA CGGCGACGGA TGTCATTACT
TTTCCGCATG GAGACGGAAT AGGAGAGATC ATCGTCAGCT TTGATACCGC TATCCGGCAG
GCTTCGGAAT TCAGAGAACC TGTTTTCAGA GAACTTTTCC GGTACATGGT GCATGGTCTT
CTGCATCTGC ACGGATATAT AGATACGGAA CCGGAGGAAC GGGAACGCAT GTTTTCTTGT
CAGGAGCCTC TGGTGCGGAA GTTTGGAGCG ACCCTGGTGG ACATACCTTT TACGCATGAC
CGCTGCTCCG GCGCTTAA
|
|---|
| Protein sequence | MKPNLELYNH LGEGRLSSSV TDALIGALES CLPSVLALPE GPVPVLSGLD EVEISVVSDD
VIRDVHARFL NDPTATDVIT FPHGDGIGEI IVSFDTAIRQ ASEFREPVFR ELFRYMVHGL
LHLHGYIDTE PEERERMFSC QEPLVRKFGA TLVDIPFTHD RCSGA
|
|---|
| |