| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_7582 |
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| Symbol | |
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| ID | 6249166 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010627 |
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| Strand | - |
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| Start bp | 345523 |
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| End bp | 347478 |
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| Gene Length | 1956 bp |
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| Protein Length | 651 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642599158 |
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| Product | DNA ligase D |
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| Protein accession | YP_001863564 |
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| Protein GI | 186474593 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.373122 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGCGTT GGGGATCCGG GCGTTCAACG CGCGTGCGTG CACCGACGAC GGCCCCTGGC
GCGATGCCTC TGCTGATCGA GCCGCAGCTG GCGACGCTGG TCGACCATCA TCCGCTGGGC
GGCGACTGGT CCTATGAGAT CAAGTTCGAC GGCTATCGCA TGCTGGCACG TATCGAAAAC
GGCGCCGCCA CACTCGTCAC GCGCAACGGC CATGACTGGA CGGCCCGCGT GGCCCGTCTG
CACGATGCAC TGAAGGCGCT TCCCGTCGAC GATGCGTGGC TGGACGGCGA GGCTGTCGTG
CTGAACGCGG CTGGCATGCC CGACTTCAAC GCGTTGCAGA ATGCCTTCGA CCGTCGCAGC
ACCTCGGAAA TCGTCCTCTT TGTATTCGAC CTGCTGTGGA TCAACGGCGC CGACATTCGC
GAACAGCCAC TGCGCGCGAG ACGTGCACTT CTGCGCGAAC TGCTCGGCGA TGCCGAAAGT
CCGCTGATCC GCTATTCGGA AGACTTTGCA CAAGATCCCG CCTCGCTGGT TTCGTCCGCC
TGCAAGATGA AGCTCGAAGG CATCATCGGA AAGCGCGGCG ATGCGCCTTA CCGGTCCGGC
CGTTCGACCG ACTGGATCAA GCTGAAGTGC AACCTGCGAC AGGAATTCGT CGTCGGCGGA
TTTTCTAGGG TCAAGGGAGT GAAATCGGGC CTACGCTCAC TGCTGCTCGG CGTGTACGAG
AAAGACGGGT CGCTTCGCTA CGCCGGTCAT GTGGCACCGC ATCTGTCACG GTCACAGGGC
ACGGCATTCG CAAGGCGCAT CCGGCCGCTC GGACAGGCGA AGCCGGCCTT CTATAACCCA
CCGAACCCCG AGAAGGACCG CGAGTTTCAC TGGCTCAAGC CCGACATTGT CGCCGAGGTG
TCATTCCTCG AATGGACGCC CGGTGGCGAG ATCCGTCATC CCGTCTTTCA TGCGATACGC
GAGGACAAGC CCGCCGCGGC AATCACGGAG GAAACCGTCG TTGATGATCC TGCCTCGGGT
CTGTCCGGAT CGACACGCGA GCGCCCGGGG CCGCGCGGCA CGGTGATCAT CAGCGACGTG
AGGATCAGCA ACGCCCAGCG CATCATGGAT GAGGTGACGG GTCATACGAA GCTGGATCTG
GTGCGCTATT ACGATGAAAT CGCCGAATGG GCGCTACCGT ACCTGCATTG CCGGCCGCTG
GCGCTGGTGC GCGCGCCGGA CGGGATACAG AAGGAGCTGT TCTTTCAGAA GCACAGCGAA
CGGGCGCGCA TTCCTGGCGT CGAGGAACTG CCGCGTGAAC TGCATCTCGG GCATCCGCCA
CTGCTTGTCG CCAACACGCG CGAAGCGCTT GTCGGTCTTG CGCAGATGAG CGTCGTGGAG
ATGCACTCGT GGAACGGCGT CGCGCCGGAT CTCGAGCACC CTGACCGGGT CATCTTCGAT
CTTGATCCAG ACCCGGCGTT GCCGTGGCAT GCAATGCTTG AGGCTGCCTC GCTCGTCAAG
GTCGTCCTGG ATGAGATCGG GTTGCGCTCG TTCGCAAAGA CAAGCGGCGG CAAGGGCTTT
CACATCGTCG TGCCGCTCAC GCGCCGGCAG GAATGGGATG AGGTAAAGGC GTTCTCACAG
GCTGTCGCCC AGCATATGGC GCGCGTCGTC CCACAGAAGT TCTCCGCCGT GCTCGGACCA
AAGAACCGCG TCGGCAAGAT CTTCATCGAC TATCTTCGCA ACAGCAAAGG CGCAAGCACC
GTTGCGCCCT TTTCGGTACG GGCGCGCTCT GGCATGGCCG TGTCGATGCC CGTCTCGTGG
GACGAACTGA AAGATGTGGG GCGTGGTGAC CAGTGGACAA TGTCGCAGGC AGTCAAGCGG
CAGCGCACGC TCAGCGACGA TCCGTGGGCC GCGTACTGGC GCACGCGGCA GGGAATAACC
GCCGCGATGC GCCGTGCCGT CGGAATGAAA CGCTAG
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| Protein sequence | MGRWGSGRST RVRAPTTAPG AMPLLIEPQL ATLVDHHPLG GDWSYEIKFD GYRMLARIEN
GAATLVTRNG HDWTARVARL HDALKALPVD DAWLDGEAVV LNAAGMPDFN ALQNAFDRRS
TSEIVLFVFD LLWINGADIR EQPLRARRAL LRELLGDAES PLIRYSEDFA QDPASLVSSA
CKMKLEGIIG KRGDAPYRSG RSTDWIKLKC NLRQEFVVGG FSRVKGVKSG LRSLLLGVYE
KDGSLRYAGH VAPHLSRSQG TAFARRIRPL GQAKPAFYNP PNPEKDREFH WLKPDIVAEV
SFLEWTPGGE IRHPVFHAIR EDKPAAAITE ETVVDDPASG LSGSTRERPG PRGTVIISDV
RISNAQRIMD EVTGHTKLDL VRYYDEIAEW ALPYLHCRPL ALVRAPDGIQ KELFFQKHSE
RARIPGVEEL PRELHLGHPP LLVANTREAL VGLAQMSVVE MHSWNGVAPD LEHPDRVIFD
LDPDPALPWH AMLEAASLVK VVLDEIGLRS FAKTSGGKGF HIVVPLTRRQ EWDEVKAFSQ
AVAQHMARVV PQKFSAVLGP KNRVGKIFID YLRNSKGAST VAPFSVRARS GMAVSMPVSW
DELKDVGRGD QWTMSQAVKR QRTLSDDPWA AYWRTRQGIT AAMRRAVGMK R
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