| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_6705 |
|---|
| Symbol | |
|---|
| ID | 6248239 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010625 |
|---|
| Strand | - |
|---|
| Start bp | 1309305 |
|---|
| End bp | 1311275 |
|---|
| Gene Length | 1971 bp |
|---|
| Protein Length | 656 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642598374 |
|---|
| Product | Fis family proprionate catabolism activator |
|---|
| Protein accession | YP_001862776 |
|---|
| Protein GI | 186471458 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR02329] propionate catabolism operon regulatory protein PrpR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.344475 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTGA ATCCGACCCG GACCGCCGCG ATGAGCACAC CTTCCGCCGT TTCCAACCCG
CGCCCGCGCA TCTGGGCGAT GGGCATCAGC CGCTTGCGCG ATCTGTTCGT CGATATCGCG
AGCGAATACG CCGCCCGCGC CGATTTGCGT GTCGTCGCCC GCGGTTTCGA CGACGCCGTG
CAGGAAATCG AGGCGGCGGG TTCCGAGCTG CCGGACGTGA TCGTCGCAGG CGGCTCGAAC
GGCGCGTATC TAAAGACGCG TGTCAGCGTA CCCGTCGTGG TCATCGCGCC CACTGGCTTC
GACGTGATGC AGGCGCTGGC ACGGGCGCGG CGCGACGGCA ATTCAGTCGC GCTCGTCACG
CACGGCGACA CGCCCGACGA GGTGAAGCGT TTTGCGTCGG CATACGGCAT CGACGTGATC
TTCGCGTCAT ACCGCTCGAC GGAAGACGCA GAGGATTGCG TGCGCGAACT GCGCGAGCGT
GGCGTGGACG CCGTCGTCGG GCCGGGCCAC GTGACCGATC TCGCCGAGCG TGCGGGCATG
GGCGCCGTCT TCCTGTATTC GCGCGCCTCG GTGCGCAGCG CCTTCGATAC GGCGCTCGAA
GTGGCGCACG CCACGCGTGC CGAAGGCATG CGCCGTCAGC GCCTCGACAA CCTGTTGCAG
CATTTGCGCG ACGGCGTCGT CGCGCTGGAC GCCCAAGGGC GCGTCGAAGC GATCAACCGG
CGGCTGGCGG GCGTGCTCGG TATCGACGCC GCAAGCGCAG CCGGTTCGCC GTTGGAGCAG
CTCGCGCCCG ATATCGCCGG CGCGCTGCCC GATAACGACG GCGACACGCT CGTGTCCGTG
CGCGGCACGA GCTATCTCGT GCATCGCGGG CCGCTGGCGG GCGCTGATTC ATCGGCGGGT
ACAGTGCTGA CCTTCCAGGA ATCGCGTGCG GTAGAACGGC TGGATCGCAC GCTGCGTTCG
CGCCAGCGCG CGCAGCAGCT TACGGCCCGC TACCAGCTAG ACGATCTGGT CGGCGAGTGT
CCATCGATCG AGCGTGTGCG CATGCTCGTG CGGCGGTATG CGAAGTCCGA TGCAACCGTC
TTGATACTCG GCGAAAGCGG CACGGGCAAG GAAATGGTGG CGCAAAGCAT GCATCAGCTG
AGCGCGCGGC GCGACTTTGC ATTCGTCGCG ATCAATTGCG GCGCATTTCC GGAGGCCCTG
CTGGAAAGCG AGTTGTTCGG CTACGAGGAA GGCGCGTTCA CAGGTGCGCG CAAAGGCGGC
AAGGCGGGAC TGATCGAAGC GGCCCATCGC GGCACGCTGT TTCTCGATGA GATCGGCGAG
ATGCCGCTGC CGCTGCAGAG CCGGCTGCTG CGCGTGTTGC AGGAGCGAGA AGTGGTGCGG
CTCGGATCGA CGGAGCCGAC GCGTGTCGAT ATCCGCGTGG TTGCCGCAAC GCACCGTGCG
TTGACGGAAG GCATCGGGGA CGGCACGTTT CGCGCGGACC TCTACTATCG GCTGAACATT
CTGAGCATTG CGCTGCCGCC GTTGCGCGAA CGCACGACCG ACGTGCTGCC GCTTGCCGCC
CAACTGCTGC TGCAGGCGGC AGCGCGCGAA CCGAGGCTGG CCGCGCGCGT CGGCGATCTG
CCCGCAGCGA CGCGCGTGCT CGCGCAGATC GGAGAGCCGT TACGCGGCTA CGCGTGGCCA
GGCAATGTGC GCGAGTTGCA GAACGTGATC GAACGGATTG CCGTCGAGCT CGCCGATACG
GAAGACGACA CGTTCACGCG CGAGATGCTC GATGTCGTCG CACCGGAACT ATTCGCATCG
TCGAAGCCGC AAAAGAAGGG CACGTTGACG TTGCGCGAGC GCAGCCGGCA TGTCGAAGCC
GACGAGATAC GCGCGATGCT GGCGGTGTGC GGCGGAGATC GCGATGCCGC GTGCCGAGCG
CTCGGCATCA GCAAGACGAC GTTGTGGCGC AAGCTCAATG CGACGCAATG A
|
|---|
| Protein sequence | MTVNPTRTAA MSTPSAVSNP RPRIWAMGIS RLRDLFVDIA SEYAARADLR VVARGFDDAV
QEIEAAGSEL PDVIVAGGSN GAYLKTRVSV PVVVIAPTGF DVMQALARAR RDGNSVALVT
HGDTPDEVKR FASAYGIDVI FASYRSTEDA EDCVRELRER GVDAVVGPGH VTDLAERAGM
GAVFLYSRAS VRSAFDTALE VAHATRAEGM RRQRLDNLLQ HLRDGVVALD AQGRVEAINR
RLAGVLGIDA ASAAGSPLEQ LAPDIAGALP DNDGDTLVSV RGTSYLVHRG PLAGADSSAG
TVLTFQESRA VERLDRTLRS RQRAQQLTAR YQLDDLVGEC PSIERVRMLV RRYAKSDATV
LILGESGTGK EMVAQSMHQL SARRDFAFVA INCGAFPEAL LESELFGYEE GAFTGARKGG
KAGLIEAAHR GTLFLDEIGE MPLPLQSRLL RVLQEREVVR LGSTEPTRVD IRVVAATHRA
LTEGIGDGTF RADLYYRLNI LSIALPPLRE RTTDVLPLAA QLLLQAAARE PRLAARVGDL
PAATRVLAQI GEPLRGYAWP GNVRELQNVI ERIAVELADT EDDTFTREML DVVAPELFAS
SKPQKKGTLT LRERSRHVEA DEIRAMLAVC GGDRDAACRA LGISKTTLWR KLNATQ
|
|---|
| |