| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_6097 |
|---|
| Symbol | |
|---|
| ID | 6247664 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010625 |
|---|
| Strand | - |
|---|
| Start bp | 643860 |
|---|
| End bp | 644702 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642597800 |
|---|
| Product | shikimate dehydrogenase substrate binding subunit |
|---|
| Protein accession | YP_001862202 |
|---|
| Protein GI | 186470884 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00430016 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.376579 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAAG CAACTGCAAC CCATGTCGCC GTATCGCTCG ACGAGGGACT CAGCGGCGCG
ACGCGCGTGT ACTTCATTGT TGGCGACCCG ATTGCGCAGG TGCGTTCGCC CAAAGGCGTG
ACGGCTGCAC TGCGTGAAGC AGGGCGTGAC GCGCTCGTGG TTCCCGCACA TGTCGCACCG
GACGATCTCC CGGCGTTCTT CGCCGGCGTC GCGCCGATGC GCAATGTCGA TGGCGTGATC
ATCACCGTGC CGCACAAGTT CAGCGCGGCC GGCTTCTGTT CGAGCCTGTC GGAAGAGGCC
GCATTTCTCG GCGCGGTGAA TACGCTGCGG CGCGCCGCCG ATGGCGGCTG GCATGGGGGC
ATGTTCGACG GCACGGGCTT CGTCGCAGCA CTCGAAGATG CAGGCTGCGA TCTGCAAGGC
AAACGCGCGC TGCTGATCGG CGCGGGCGGC GCGGGCTCGG CGATTGGTCA GGCGCTCGTC
AAGGCGGGCG TTGCGTCGCT CGACGTGCGC GATAACGATG CAGAGCGCAC GGGATCGCTA
GTCAAGCGTC TCGCCGCGAT GCAACGCGGT GCCGTGCAGG TGGCCACTGC CGATGTCGAC
GCTGCATCGT ACGACGTGGT CGTCAACGCA TCGCCGATGG GCATGCGCGC CGACGATCCA
TTGCCCATCG ACGTATCGCG CCTGCCCTCG TCCACTTTCG TCGGCGACGT CGTCACCAAG
CCGCCGCTCA CGCCGTTCAT CGAAGCGGCG CGCGCGCGGG GCTGCAAGAC CGTCACGGGC
ACACAGATGT TCGGCCGGGT GTGCGACCGC ATGGTCGATT TTCTGCTCGA CGCGAAAGCA
TGA
|
|---|
| Protein sequence | MTQATATHVA VSLDEGLSGA TRVYFIVGDP IAQVRSPKGV TAALREAGRD ALVVPAHVAP
DDLPAFFAGV APMRNVDGVI ITVPHKFSAA GFCSSLSEEA AFLGAVNTLR RAADGGWHGG
MFDGTGFVAA LEDAGCDLQG KRALLIGAGG AGSAIGQALV KAGVASLDVR DNDAERTGSL
VKRLAAMQRG AVQVATADVD AASYDVVVNA SPMGMRADDP LPIDVSRLPS STFVGDVVTK
PPLTPFIEAA RARGCKTVTG TQMFGRVCDR MVDFLLDAKA
|
|---|
| |