| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_5147 |
|---|
| Symbol | |
|---|
| ID | 6246641 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010623 |
|---|
| Strand | - |
|---|
| Start bp | 2259098 |
|---|
| End bp | 2260000 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642596877 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_001861280 |
|---|
| Protein GI | 186473938 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.153837 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.472101 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCTC CCGCACATCG CGCGCTGCCC GGCCACGGGC GCTTTCAGTA TTTGCCGATC
AACGGCCGCC CTGTTTATCG CTGGCCTGAC GGCTCGCGGC TCGCGGTCTA TATCGGCTTC
AACATCGAGC ACTTTGCGTT CGGCGCTGGA CTGGGGCCAA CTATCGGTCC GGTGATGCCC
GAACCCGATG TGCTGAATCA CGCGTGGCGA GAGTACGCAT TGCGTGTGGG CGCATGGCGC
TGTCTCGATC TCTTCGATGA ACTCGCGCTG CCGACGGCCG CCATCATCAA CACGGCGCTC
TACGATCACT GCCCGGAGCT GGTCGCCGCT TTCGCTCAAC GCGGCGACGA ACTGGTCGCG
CACGGCCATA CGAATTCGGA ACGGCAAGGA ACGCTTACCG AAGACGACGA ACGCGCGCTG
ATCACTGCGT GCCGGGAGCG GATCGCGGCG GAGAGCGCGC AACACCCAGC GGGCTGGTTG
TCGCCGTGGC TCTCGGAAAG TCATGTCACC AGCGATCTGG TAGCCGAAGC GGGCTATCAG
TACACGCTCA ACTGGTGTCA CGACGATCAG CCGACGCGCC TGCACACGCG CAACGGTCAG
CCGCTGTGGG CGATTCCGTA TCCGGAAGAA GTCAACGATA TCCCGATGAT CCTTGCACGC
CAGATGGATG CGAAGTCGTT CGCCGATCTG GTGATCGACC ACTTCGAGGA AATGCTGCGG
CAATCCGCAG GTCAGCCGCT GGTGATGGGA ATTGCCTTGC ATGCATACCT GATGGGTCAG
CCACATCGTT TGTGTCACTT GCGGCGGGCA CTCGAACATA TTGCGCGCGC GCGCGACGAC
GGTCTCGCCT GCATTACTAC GCCGGGTTCG ATCGCAAGCC ATATGGACTT CCTCGGCCGT
TAG
|
|---|
| Protein sequence | MNSPAHRALP GHGRFQYLPI NGRPVYRWPD GSRLAVYIGF NIEHFAFGAG LGPTIGPVMP
EPDVLNHAWR EYALRVGAWR CLDLFDELAL PTAAIINTAL YDHCPELVAA FAQRGDELVA
HGHTNSERQG TLTEDDERAL ITACRERIAA ESAQHPAGWL SPWLSESHVT SDLVAEAGYQ
YTLNWCHDDQ PTRLHTRNGQ PLWAIPYPEE VNDIPMILAR QMDAKSFADL VIDHFEEMLR
QSAGQPLVMG IALHAYLMGQ PHRLCHLRRA LEHIARARDD GLACITTPGS IASHMDFLGR
|
|---|
| |