Gene Bind_3353 details

Gene Information

• Locus tag: Bind_3353
• Symbol: rimM
• ID: 6200357
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Beijerinckia indica subsp. indica ATCC 9039
• Kingdom: Bacteria
• Replicon accession: NC_010581
• Strand: +
• Start bp: 3806793
• End bp: 3807314
• Gene Length: 522 bp
• Protein Length: 173 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 641707299
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_001834399
• Protein GI: 182680253
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 20
• Fosmid unclonability p-value: 0.170561
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGCGCGGCG AGGTGCGGCT ACAATCCTTC ACTGAGGTGC CGCAAGCGAT CAGCGCTTAC 
GGTCCCTTGT CCGATGCCTC GGGCAAGAAA AGCTTTTCCA TCGCCTCTCT CCGTTTGGTG 
AAGAATGCCG TATTTGTCGC CCGCATCGAG GGGGTGACGA CGCGCGAGGC GGCGGAGGCT 
TTGACCAATC TCTCCCTCTA TGTCTCACGC GAGGCCCTGC CTCCCCCCGA GGAAGAAGAG 
TTCTATCTCG CCGATCTGAT CGGACTCGAC GCTTTCGTCG CGGATGCGGA CGGCAAGGAA 
GTGCTTTTCG GCCGGATTGC TGATGTCTTG AATTTCGGCG GTGGTGACAT TCTGGAAATC 
GCTCCTTCGG ACGGTGGCGA GACAAGACTC CTGCCCTTCA CACGGCAAGT CGTACCTCGC 
ATCGATCTCA CCGCCCGTCG GGTACTCGTG GTTCCGCCCG AGGAAGTCGA GGCACAAGAA 
CCACCTGAAA AAGATGCAGG CGGAGACGAG CCATCGCCAT GA 

 

Protein sequence

MRGEVRLQSF TEVPQAISAY GPLSDASGKK SFSIASLRLV KNAVFVARIE GVTTREAAEA 
LTNLSLYVSR EALPPPEEEE FYLADLIGLD AFVADADGKE VLFGRIADVL NFGGGDILEI 
APSDGGETRL LPFTRQVVPR IDLTARRVLV VPPEEVEAQE PPEKDAGGDE PSP