Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bind_3067 |
Symbol | |
ID | 6198161 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
Kingdom | Bacteria |
Replicon accession | NC_010581 |
Strand | + |
Start bp | 3500646 |
End bp | 3503057 |
Gene Length | 2412 bp |
Protein Length | 803 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 641707015 |
Product | general secretion pathway protein D |
Protein accession | YP_001834118 |
Protein GI | 182679972 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0574712 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAACCAAG TGAACGGACA TTTCCTGACG CGCTATCCGC GTCAGTCTCT GTCTTCCCTC TTAGACGGAC CGGGCAGTGC TCGCCAAGGA ACTGGCGCAG CACAGGCGGT TCTTGCATGG CTATCTCGGC GATCGACGCT GATGACCCTG TTGTTTGCTC TTTCGACGAT TCTTGCAGGC TGTAATGGAA TTACTGGACC GGAAGTGGCT AGTCAGGTCA AACCGATGAA TGGCTTTGGC GGGCAGGATC TGGCTGCGCG TTCCAGCACG AATGGAAACG ATACCTTTGG CGCTTCGCCG CTCCCCGCGG CTCCGGGACC CATCATTTCT CGCGGAGGAA TCGCTGGCGC TGCCCAAGCC AATGCGAGCG ATTTCGCGGA AAACGGCGCG AGCGCGGTTA CGGGTAATGT CACGCTGACG CCTGTGGAGA GCGCGGGCGA TTATCAGTTG AATTTCGAAA ATGCCGAGGC CACAGCCGTC ATCAAGACCG TGCTGGGCGA TGTCCTGCAG GTCAATTATG TCATCGATCC GCGCGTGAAT GGGCAGATCA GCTTGACCTC ATCCCGGCCG GTTCCACGCA AATCCCTGAT TAGACTGTTG GAATCGGCCT TGAGCGGGAT CAATGCCGTC ATCCTCAAGC AAAACGGCCT TTACCGGGTC GTGCCGGCCG GCGACGCCAC CACGATTCAG AATGTCCACT ACCATGAAGC GGGCGAAGGC TTTGGCGTGA CGGTCATCGG CATGAAGAAT GTCCCCGTCG CGCTGGCCGG ACGCGTTCTC GAAGGATTGG GGAGCCGTGG CGGCTCGGTC CGGATGGAGG CCGATTCCAA TCTTCTGATC TTTCAGGGAA CGGCCTCAGA GCGGCAGGCC GCGCTCGATG CGGCCTCCAT GGTCGATGTC GATTGGCTCA AAACTCGATC CGTCGCCATT CTGCCTCTCA CCAATTCGGC GCCGGACACG GTCATTGCCG AAGTCCATCG TATCCTTGGC ACTGGCGAAG GCGGTTTGAG CAAGGATATT GTCCAGATGC AGCCGATCAA CCGGCTGAAC GCGGTGCTGG CCGTTTCGCG AAACCATGCC GCCATCGATA AAGTGACACG GTGGGTTTCC AAGCTGGACA AGGCGGATTA CGCCGCCCTC GGCGTCAACG TGTACAAGCT GCAATATGCC AATGCCAAAA ACGTCGCGGC CATGCTGAAC CAGATCTATG GCGGCAGCGG CGGCCAAACC GGCCAGGATC AGGATAAGAA TGTGCTTCAG CCGGGTGACT CATCCAGCTC AAGTATGCAG GCAGGCTTCA GCAAGAGCGG GAGTGGTTCC AGCCAGGAAC CAAGCAGTCA ATCAAGCAAT CAAAGTGGAA GCGGCCGAGT CACAGCAGGA TCCCTGTTCG CGAACGCAGG ATTGAGATCC AGCTCGGCCA ACTCGAATCC TTACGGAAGC CTCAGCCCTG CAACAGCTGC GCAGACCTCT GGCACACGCA CTGATAATAC GAGTTCGCAA GCGCCCGATG ACCGTCAAAG CAAGGTTATA CGCATTACGC CCGATATCTC GACTAATTCG CTGCTGATCC ACGCTAATCG GCTCGATTAT CGATTGATAG AACGCACCAT TCACGCCATG GACCGGCCAC CGGTCCAGGT CGAGATCGAA GTGACCGTCG CCGAAGTCAC CCTGACGGAT GCGCTCAATT ACGGCGTACA AGCCTATCTC AACAGTTCCG CCGGCTCGTT GCAGATGCTT GGAAGCGCCG GTATTTCCAA TGCCAGCATT CCCCTGGTCA CGCCCCATCC GGCGGTGAAC CTGATGATCG GTCAGATCGC CAATCCGCGT GTGGTGATCA ATGCTTTGTC GAATATCACG GATGTCAAGG TTCTCTCGAC ACCTTCGCTC GTCGTGCTCG ACCGGCAGCC CGCCGTGCTC CAGGTCGGTA ATCAGGTGCC CATCCTCAGT CAGCAGGCGA CCTCGACACA AACGGCGAAC CCGGCGATCG TCAACAGCGT CAATTACAAG GATACCGGCA TTATCCTGAA TGTGCTGCCG CGTGTGAATG CCAATGGCGT GGTGGCGCTG GATATCGAGC AGCAAATCAG CGCGGTGACA AACCCCGACC CGACGAATTT GACACCGACG ATTTCGCAAC GGCGGGTTCG CAGCACCATT GCCATTCCCA ATGGTCAGAC GGTTCTGCTC GCCGGGCTGA TCCAGGAAAC AACCAATGGA ACCCGGTCCG GCCTCCCCAT CATCAGCAAG ATCCGTTTCC TGAACGATCT CGTCACCAAT CATAATTCAT CTGACAGCCG CACCGAATTG ATCATGTTCA TCAAGCCTCA GATCCTCCGC AATGGTTTCG ACTCGCAGCA GGTTTCCGAG GAATTTCGTG AGCGCTTGCA GATGATGCGC AGTCACCCGT GA
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Protein sequence | MNQVNGHFLT RYPRQSLSSL LDGPGSARQG TGAAQAVLAW LSRRSTLMTL LFALSTILAG CNGITGPEVA SQVKPMNGFG GQDLAARSST NGNDTFGASP LPAAPGPIIS RGGIAGAAQA NASDFAENGA SAVTGNVTLT PVESAGDYQL NFENAEATAV IKTVLGDVLQ VNYVIDPRVN GQISLTSSRP VPRKSLIRLL ESALSGINAV ILKQNGLYRV VPAGDATTIQ NVHYHEAGEG FGVTVIGMKN VPVALAGRVL EGLGSRGGSV RMEADSNLLI FQGTASERQA ALDAASMVDV DWLKTRSVAI LPLTNSAPDT VIAEVHRILG TGEGGLSKDI VQMQPINRLN AVLAVSRNHA AIDKVTRWVS KLDKADYAAL GVNVYKLQYA NAKNVAAMLN QIYGGSGGQT GQDQDKNVLQ PGDSSSSSMQ AGFSKSGSGS SQEPSSQSSN QSGSGRVTAG SLFANAGLRS SSANSNPYGS LSPATAAQTS GTRTDNTSSQ APDDRQSKVI RITPDISTNS LLIHANRLDY RLIERTIHAM DRPPVQVEIE VTVAEVTLTD ALNYGVQAYL NSSAGSLQML GSAGISNASI PLVTPHPAVN LMIGQIANPR VVINALSNIT DVKVLSTPSL VVLDRQPAVL QVGNQVPILS QQATSTQTAN PAIVNSVNYK DTGIILNVLP RVNANGVVAL DIEQQISAVT NPDPTNLTPT ISQRRVRSTI AIPNGQTVLL AGLIQETTNG TRSGLPIISK IRFLNDLVTN HNSSDSRTEL IMFIKPQILR NGFDSQQVSE EFRERLQMMR SHP
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