| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_2380 |
|---|
| Symbol | |
|---|
| ID | 6201355 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | - |
|---|
| Start bp | 2718592 |
|---|
| End bp | 2720940 |
|---|
| Gene Length | 2349 bp |
|---|
| Protein Length | 782 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641706363 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001833480 |
|---|
| Protein GI | 182679334 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.397663 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.960991 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTACCCA CTTCACGCGG GCCGACGCGC AATCGCGCCT TGGTTCTCCA TATTCCTGTT
ACTTTGCTAG CCTCGGCGAG TTCGTTCTTC TCGACTCCGG CCACAGCGCA AGAGCCTGTG
GAATTGCAGG ATATCGTCGT CACCGCCGAT CATCCCTCGC TTGCCTCGGC CGCGGTTCCG
CCGATCAAGC AAAAATATCA GCTGCCACAG ACATCGCAGA GCGCCACGGC TGCAACCATC
GCGGAAAAGA TCAACATCAT CGATACGGAA GATTCGGTGA AATATTTTCC CAGTCTCTTC
GTGCGCAAAC GCAATTACGG TGACACGCAG CCGACGCTCG CGACGCGCAC CTGGGGTGTC
AATTCCAGCG CCCGCAGTCT CGTCTATGCC GATGATCTCC TTCTCTCGGC TCTCATCGCC
AATAATAATA CGCTGGGCGC GCCCCGCTGG GGTCTCGTCT CACCCGAAGC GATCGACCGC
GTTGATTTTC TCTATGGTCC CTTTGCCGCC GCCTATCCAG GGAATTCCAT GGGCGGCGTT
TTGCAGATCA CGACGCGCAT GCCCGATAAG CCGATCGCGG TCCTGAGTCA GAACGAAGCG
TTCCAGACTT TCAACCGCTA TGGCACGAAA GATACCTATC GGACCGATCA AACCAATGTC
GTGATTGGCA ATAGAAGCGG TGATTTTTCC TGGTTCATCA CCGGCAATTA TCAAAACAGC
TATAGCCAGC CGCTTTCTTT CATCACCAGC GCGACATTTC CAAAAAATAC AACGGGCGGC
TTTGCCGCCT TGAACAAGCT TGGCGCACCG GCCAATGTCC TTGGCGCCGG TGGATTGTTG
CATAGCGAGA TGGCCAATAT TTCCGGCAAA TTCGCTTATG ATATTACGTC CTGGCTACAA
ATGACCTATC AGATTGGCTT CTGGTCCAAT CATACCAATT CATCCGTCCA GACCTATCTG
CGTGATGATA CCGGGGCTGC GACATTCGCG GGTCAGTCAA GTTTCGCGAA CAATAATTAT
ACATTGACGG AACAGCATCT GAGCAATGCC CTCTCGTTCA AGACGCATAC AGGTGGTGTC
TTCGATTGGG ATTTGTCAGT CTCCAATTAT TATTTTCTGT ATGATAGTCA GAAAAGCCCC
TATGGCGTGA CGGCGACGGG CGCTGGGTTT ACAACCAATG GCAAGATCGC GCGGCTCGAT
GGCACGAATT GGATCAATGG CGATTTCAAT GGCATCTGGC GGCCTATGGG GCCGGGCAGC
GAGCATGAGA TCAGCTTCGG CCTGCATGCC GATCGTTATT TTCTGACCAA TCCAACTTAT
GCCAGCTCGG TTTGGAACAG CGATGCGGAA TCGAGCAATT CCCTTTATAC GAACAGCCGT
GGAACCACTG TCACCAAGGC CATCTGGGCG CAAGATGCCT GGCGCCTCGC GCAGAATGTC
AAATTCACGC TCGGCGGACG CCTGGAGCAA TGGCAGGCTT TCGGCGGTTT GAATCTCGCG
ACCAATGCGA CGAGTGCCGG TGTCATCACC AGTACGACTA TCCAGAATCA GCCGAGTCTG
GATGCCGTGC GCTTCTCGCC CAAGGTGTCG CTCAACTGGG CGCCCTCGGC CGAATGGGAC
ATTACAGGCT CCTTTGGCCA AGCCTATCGT TTTCCGACCG TGACGGAACT TTATCAGATT
GTCGCGACGG GTGCGACTTT TTCGGTGCCC AACCCTGATT TACGGCCGGA GAATGTGCTG
AGTGAGGAAC TGGCCATCGT GCGGAAGTTC GACTCTGGCC ACGTGCGTCT CTCATTGTTC
AATGAGAATG TCTCCGACGC CATCATCGCT CAGACCAGCT TTCTAGGTGT CAGCCAAACG
CCCACCACTT TCACGATGAA TGTGGATGCC ATCCGCAATA GCGGCGTGGA ATTGGCGGCG
CAGAAGGATC ATTTCATTTT TGATGAGGTC GATGCCTTCG GCAGCGTGAC TTATGTCGAT
TCCCGCATTC TCCAGGACGC GGGCTGGGCC AGTTCCACCG GCACGACAGT TGTCGGCAAA
CATGTGCCCT ATGTACCCGA TTGGCGTGTG ACAGCTGGTG TCACTTATCA TCCGACGCCA
AACTGGGCGC TGACCGCTGC CATGCGCTAT AGCGGCAAGC AATATTCAAC GCTGGATAAT
ACCGATGTCG TTCCCCAGGT GTTCGGCGCC TTCGACAGTT TCATCGTGGC CGATGTGCGT
GCCCAATATA AACTGAGTGA TCAGACCTGG ATCAATCTCG GGATCGATAA TATCAATAAT
GATAAATATA CGCTTTATCA TCCCTTTCCG GGGAGGACGT TTACCTTTGG AGCGCGCGTG
CAGTTTTAA
|
|---|
| Protein sequence | MVPTSRGPTR NRALVLHIPV TLLASASSFF STPATAQEPV ELQDIVVTAD HPSLASAAVP
PIKQKYQLPQ TSQSATAATI AEKINIIDTE DSVKYFPSLF VRKRNYGDTQ PTLATRTWGV
NSSARSLVYA DDLLLSALIA NNNTLGAPRW GLVSPEAIDR VDFLYGPFAA AYPGNSMGGV
LQITTRMPDK PIAVLSQNEA FQTFNRYGTK DTYRTDQTNV VIGNRSGDFS WFITGNYQNS
YSQPLSFITS ATFPKNTTGG FAALNKLGAP ANVLGAGGLL HSEMANISGK FAYDITSWLQ
MTYQIGFWSN HTNSSVQTYL RDDTGAATFA GQSSFANNNY TLTEQHLSNA LSFKTHTGGV
FDWDLSVSNY YFLYDSQKSP YGVTATGAGF TTNGKIARLD GTNWINGDFN GIWRPMGPGS
EHEISFGLHA DRYFLTNPTY ASSVWNSDAE SSNSLYTNSR GTTVTKAIWA QDAWRLAQNV
KFTLGGRLEQ WQAFGGLNLA TNATSAGVIT STTIQNQPSL DAVRFSPKVS LNWAPSAEWD
ITGSFGQAYR FPTVTELYQI VATGATFSVP NPDLRPENVL SEELAIVRKF DSGHVRLSLF
NENVSDAIIA QTSFLGVSQT PTTFTMNVDA IRNSGVELAA QKDHFIFDEV DAFGSVTYVD
SRILQDAGWA SSTGTTVVGK HVPYVPDWRV TAGVTYHPTP NWALTAAMRY SGKQYSTLDN
TDVVPQVFGA FDSFIVADVR AQYKLSDQTW INLGIDNINN DKYTLYHPFP GRTFTFGARV
QF
|
|---|
| |