| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_1083 |
|---|
| Symbol | |
|---|
| ID | 6203869 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010577 |
|---|
| Strand | + |
|---|
| Start bp | 1226428 |
|---|
| End bp | 1227447 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641702607 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001829785 |
|---|
| Protein GI | 182681625 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.000439188 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGACGTA AGCCAATCAA AGCAGGTGCG ATTCCGAGGT TTCGCGTGCG CCCTCAGAAG
TCCGGCGTGG TGTATTACTA CTACGATCAT GGCGGCAAGC CACGCAAAGA GACGCCACTG
GGACGCGACT ACGGGTTAGC CATCAAGCGG TGGGCTGAGC TGGAGCATGC GCAGATCACT
CCTGCCATTG CGGTGACGTT CCGCCATGTG GCCGAGCGTT ACCGCGCTGA GGTGACCCCG
ACAAAGGCGT ATAACACCCA GCGCGTGGAG CATCGTTGTT TGGCTCCACT CCTGAAGTTT
TTTGATGACC CACCCGCGCC GTTTGAGGCT ATTAAACCAG TGAATATCCG TCAGTATCTG
GATTGGCGCA CCTCTAAGGT GATCGCCAAT CGTGAGGTGT CCGTGTTTTC GCATCTTTGG
AATTGGGCGC GGAGTAAGGG AATTACTGAT CTTCCTAACC CTTGTGGGGG CATCCGGCGT
AATAAGGCGA CAGGTCGCGA TGTATATGTA GACGATACGA CGTACCGCTC TGTGTACCAA
GCAGCGGACC AAACGCTCAG GGATGCGATG GACCTTGCCT ATCTGACGGG GCAGCGTGTG
AGTGATGTTG TGTCTATGGA TGAGCGCCAT ATTGTTAATG GCGCTTTGGA GATTTGCCAA
GCTAAAACGG GCGCAAAGTT GGCGATTACG GTCACTGGCG AATTGGCAGT TTTAATAAAG
CGTATTTTTG ATCGCAAGCG GGGGATGAAG CTGCGTAGCA CGCGTTTGAT TGTGGATGCG
GAAGGCTTGG AGCTAAGTCG TATAGGATTG CGTTACAGGT TTGATAAGGC ACGTGCTGCC
GCAGGGGTCG CCAAGGAGGT ATTCCAATTC CGCGATCTAC GCGCCAAAGC GGCGACCGAT
AAGGCGGATT TGGCGGGGGA CATCCGCCAA GCACAAGCAC AATTAGGGCA TGCGTCGGTG
ACGATGACGG AGCACTATGT ACGCAAGCGC AGGGGGGCGA AGGTGACGCC GACGCGGTAA
|
|---|
| Protein sequence | MGRKPIKAGA IPRFRVRPQK SGVVYYYYDH GGKPRKETPL GRDYGLAIKR WAELEHAQIT
PAIAVTFRHV AERYRAEVTP TKAYNTQRVE HRCLAPLLKF FDDPPAPFEA IKPVNIRQYL
DWRTSKVIAN REVSVFSHLW NWARSKGITD LPNPCGGIRR NKATGRDVYV DDTTYRSVYQ
AADQTLRDAM DLAYLTGQRV SDVVSMDERH IVNGALEICQ AKTGAKLAIT VTGELAVLIK
RIFDRKRGMK LRSTRLIVDA EGLELSRIGL RYRFDKARAA AGVAKEVFQF RDLRAKAATD
KADLAGDIRQ AQAQLGHASV TMTEHYVRKR RGAKVTPTR
|
|---|
| |