| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4517 |
|---|
| Symbol | |
|---|
| ID | 6204913 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 5807946 |
|---|
| End bp | 5809304 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641694185 |
|---|
| Product | oxidoreductase domain-containing protein |
|---|
| Protein accession | YP_001821388 |
|---|
| Protein GI | 182416322 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0673] Predicted dehydrogenases and related proteins |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.234249 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCCT TGGACTCGAT CGATCGGCGG ACTTTTATCA AAAACAGCGC GCTCGCGGGC
GCCGGTCTGA TGCTGGCGAC GAACCGCGCC CCGGCGGCGG TCGAACAGAC CGGTCGCAAC
AACGCCATTC GCGTCGCCTG CATCGGCGTG GGCACGCAAG GGCACCGGCT GCTGCAGGCG
GCGCAGAACG TGCCCGGCAC CGAGATCTCC GTGATCTGCG ATCTCTACGC GGGCAACATC
GCGCGGGCGA AGGAGCTGTG CCTGAACAAG GACGTCCGGA TCGTGAAGGA GTGGGAGAAG
GTCGTGGCGG ATCCGTCGAT CGACGCGGTG ATCATCGCCG TGCCGGATTT CTGGCATGCG
CCGATCACGG TCGCGGCGGC AAACGCCAAG AAGGACATCT ATGTCGAGAA AGGCTGGTGC
AAGACGCTGC CCGAGGCGAA GCAGATGCGC GAGGCGGTGA AGCGGAACAA GGTGGTGATG
CAGCTCGGCC ACCACATGAA CAGCATCCCG CAGATGCACA AGGCGCTCGA GATCTACAAA
TCCGGCGCGC TGGGCAAGGT CCCGCTCGTC CGCGGTTACA TCGACCGCAC CAACGAGCAC
CCGGAGTGGA AATTCTACAC CGACTACGGC ATTCAAGAGA TGCCGAAGGA CGCCTCGCCC
GAAACGATCG ACTGGAAACG GTTCGTCGCG AACTCGCCGC ATCCGGACCA GCCATTCGAT
GCGGAACGTT TCTTCACGTG GCGGCGGTAT TGGGATTTTG GTACCGGCAT TGCCGGCGAT
CTGCTGACGC ACATTTGGGA TGCGATCAAC ATGGTGCGCG GCATGGGTAT CCCGGAGAGC
GCGGTGACGC AGGGTGGCAA ATATTTCTGG AAGGAAGATC GCGAGGTGCC GGACATGTGG
CACGTGCTTT TCGATTATCC GAAGCAGGAG CTGGCGGTGA CCTTCAACTG CAGTTTCCAC
AACAAGCACG TAGGCGAGCT GATCCAATTC CTCGGTCGCG ACATGACGAT GGAGTGCTCG
TCGGAATTCT GCCGCACCTA CATCGCGGAC TGGAAGCCCG AGGCGGAGCA GCGCGTGATG
CAGGGCCGCC GGCTGGCCGC GGAGACGCGG AAGGCGGCCG AGGCCCTCGG CATTCAGGCG
CCGCCCACGG CGGTCGCGCC GGACTATGTG TTCCGTCCCG GCGAGCTGAA GGTCACCTCG
CACATGCAGA ACTTCTTTGA CTGCGTGCGC TCGCGGGAAC TGCCGCGCTG CCACGTCGAT
CGCGCCTTCG AGGAAGCGGT CGCGCTCGTG ATGTCCGTCG AGTCCTACCG CCGCGAGGCC
AAGGTGAAAT GGGATCCGGT GAAGGAGGAA ATAGTCTAG
|
|---|
| Protein sequence | MKPLDSIDRR TFIKNSALAG AGLMLATNRA PAAVEQTGRN NAIRVACIGV GTQGHRLLQA
AQNVPGTEIS VICDLYAGNI ARAKELCLNK DVRIVKEWEK VVADPSIDAV IIAVPDFWHA
PITVAAANAK KDIYVEKGWC KTLPEAKQMR EAVKRNKVVM QLGHHMNSIP QMHKALEIYK
SGALGKVPLV RGYIDRTNEH PEWKFYTDYG IQEMPKDASP ETIDWKRFVA NSPHPDQPFD
AERFFTWRRY WDFGTGIAGD LLTHIWDAIN MVRGMGIPES AVTQGGKYFW KEDREVPDMW
HVLFDYPKQE LAVTFNCSFH NKHVGELIQF LGRDMTMECS SEFCRTYIAD WKPEAEQRVM
QGRRLAAETR KAAEALGIQA PPTAVAPDYV FRPGELKVTS HMQNFFDCVR SRELPRCHVD
RAFEEAVALV MSVESYRREA KVKWDPVKEE IV
|
|---|
| |