| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4447 |
|---|
| Symbol | |
|---|
| ID | 6206726 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 5737852 |
|---|
| End bp | 5739231 |
|---|
| Gene Length | 1380 bp |
|---|
| Protein Length | 459 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641694113 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_001821318 |
|---|
| Protein GI | 182416252 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCTT CGCACTCAAT ACCGCTCGTA GGCTACCTGC TTTGCTGTTT CGCTGCGACC
GCGGCACCCG ATTCTAGACC GCCCGTTCCT AATCGGTTCG ATTTGAACAC GGCGATTGCG
TTCGCACTCG AAAACAACTT CGCCATCCGG CGGGCGCGAG AGAGAATCCG TGAGCAGGAA
GGCATCGTGA CCACAGTGAC TGCGGCGGCG CTGCCGAACG TCTCCGCCGC AGGCAGCTAC
CAGCACAGTG GTGTGCAGAG CGTTGCAACG GGGTCCTCGG GCGTGCCGCT TTTCATCGCT
AAAGGCCCCT CCTGGCGGAT GTCATTGACG GCAAGCCAGA CGGTGTTTGC GGGTGGCGGC
GTCCGCGCCT CGATCCGCGG AGCCGAAATG GAGCGCGAAG CGGCGACTCT CGATCTTCAG
GCCGTGGTCA ACGAGGCACT GCTGGACGTC CGCACCCGCT TTTACGATGT CCTCCTCGCC
CGCGAGCAGA TCAAGGTGCA GGAGCAGAAT CTTGAGTTGC TCCAAAGCCA ATTGAGTTAT
GCAACGCAGC GCGCGCAAGC GGGAACGATT TCGGCTTTCG AACGGCTCCG CGCGGAAGTC
GCGGTCGCCA ATGCGAAGCC GCCTCTGATC CGTTCGCGGA ACAATCTGCG GATCGCGATC
GAGGAATTGC GCCAGGCGAT CGGCTTCAGG GCGGAAAAGT TGGGGACAGG AGGCGAGGTG
CCCGAATTTA TGGGAACGCT TTCCTTCGAG CCGGTGAGCT TCGAACTAGC CGCCGCCATG
GCCGCCGCCC AAGCGGACCG GCCTGATTTG CGGCGACTGG AAAAACTCGC TGCAGCGCAG
CGGGAAGGGA TCACGGTCGC GCGTTCCCGC TACTATCCGA GCCTTGCGCT GGGCGCCGGC
GGCGACTTGC GGAAGGGACC GACGACCAGT TTTGGGGATT CGATCAAGGG CCTGCGAGGG
TTCGCCCAGT CTCGCTTGGA AGTGAATCCG CGTGCGACGT CTGGTGCCAT CATGCAGGCC
GGCTCCCAAG CGGAACAGGC GGGTTTGACA GAGAGCGAAG CGAGGCTCGC CGCCGAGGTC
GAAGTGCGGC GGGCATTTTT CGCCATCGAG CGGGCGTCGG AGCTTGTCGG GGCGATGCAG
AAGACCGTCG GGCAGGCTGA GGAAGCCGTG CGGCTGGCGA CCATGCGTTT CGAGGCAGGT
GTCGCAACCC AGCTCGATGT GCTGGTCGCG CAATTGGAGC TCACCACCGC GCGCACGAGC
CAGCTCCAGG CATTCCACGG TCACAACGTC GCAGTCGCAC AATTGCGGAA GGCAATCGGC
GTCTCGGAAG TCGACTATGC CAACGCCGCT GCGCCCGCCC AAACCACCCG CGCTCCTTGA
|
|---|
| Protein sequence | MKSSHSIPLV GYLLCCFAAT AAPDSRPPVP NRFDLNTAIA FALENNFAIR RARERIREQE
GIVTTVTAAA LPNVSAAGSY QHSGVQSVAT GSSGVPLFIA KGPSWRMSLT ASQTVFAGGG
VRASIRGAEM EREAATLDLQ AVVNEALLDV RTRFYDVLLA REQIKVQEQN LELLQSQLSY
ATQRAQAGTI SAFERLRAEV AVANAKPPLI RSRNNLRIAI EELRQAIGFR AEKLGTGGEV
PEFMGTLSFE PVSFELAAAM AAAQADRPDL RRLEKLAAAQ REGITVARSR YYPSLALGAG
GDLRKGPTTS FGDSIKGLRG FAQSRLEVNP RATSGAIMQA GSQAEQAGLT ESEARLAAEV
EVRRAFFAIE RASELVGAMQ KTVGQAEEAV RLATMRFEAG VATQLDVLVA QLELTTARTS
QLQAFHGHNV AVAQLRKAIG VSEVDYANAA APAQTTRAP
|
|---|
| |