| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4309 |
|---|
| Symbol | |
|---|
| ID | 6208578 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 5586773 |
|---|
| End bp | 5588584 |
|---|
| Gene Length | 1812 bp |
|---|
| Protein Length | 603 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641693976 |
|---|
| Product | DNA polymerase LigD ligase subunit |
|---|
| Protein accession | YP_001821181 |
|---|
| Protein GI | 182416115 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase |
|---|
| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCTCA AGGCCTATGT CAAAAAGCGG GACTTCCGCA AAACGGCGGA GCCGAAGGGG
GGGCGCGCGC CCGGCGGAGC AGGGCATCGG TTCGTCGTGC AAAAGCACGC GGCCTCGCGG
CTGCATTACG ATTTTCGGCT CGAACTCGGC GGCACGCTGA AGTCGTGGGC GGTGCCGAAG
GGCATGCCCT ACGCGAAAGG CGACAAGCGG CTGGCGGTGC ACGTCGAGGA CCACCCGGTC
TCCTACATCG ATTTCGAGGG AACGATTCCG CAGGGCCAGT ACGGGGGAGG CACGGTGATG
GTGTGGGACC GCGGCACCTT CGAACCGCTG AGCGAGGCGC CGTTGAAGGA GCTCGACGGC
GGGAAACTGC ATTTTGTGCT GCGCGGAAAA AAACTGAAGG GCGAGTGGTA TCTCGTCCGG
TTGCGTGGGG GCGACGAGTG GCTGCTGATC AAAGGCGGCG AGGACATGAA GCCGGTGAGT
GCGAAGGCGG ATGACACCTC CGTGCTCTCC GGAAAATCGA TGAAGCAGCT GTCGGAAGGG
AAGGGCCGGG TATGGCAATC GAACCGGAGC GAACCGAAAT CGTTTCGCGC GAGCGTGGCG
GAGGCAATGC ACGCGGCCGA GACAAAGCGG CGGACAAAAA AGGAAACGTT CGCGAACCTG
GAGCCGCGAC GCCCCCGTCG CGGCCGGCAG GCGAGCGACG CGAAAGCGAG CCGCGACGAG
GGCGTCGCGG CCCCAGCCAA AGCCGCTCAC GGTCGAGCTG CGGATAAAAG CGCGGGCGTG
AAGGCCGAGC ACGGATCGGA GCGGGCGAGA CGCCCGCGCG CCCAGGGCCG AGCCTCCAAA
CTCACCCCGT CGTTCATCGA GCCGATGAAG GCGCTGCTGG TGGACGCGCC GCCGCCGGGC
GAATGGATTT ACGAGATTAA GTTCGACGGC TTTCGCGCGA TGGCGTTTCG CGATCGGAAG
GGCGTGCGGC TGCTCTCACG GAACAACAAG CCGTTCGCGG CAAAGTTTCC GGAAATCGTC
GACGCGGTGG CGGCGCTCGA CGTAAAGGAT GCGGTGATCG ACGGAGAGAT TGTTGCGCTC
GACGACAAGG GGCGCTCCTC GTTTCAGCTG CTGCAGGCGT ATGATCTCGG GCAGGAACAC
CCACCGTTGT TTTTCTATGC GTTCGACCTG CTGCAGTGGA ACGGGCGCGA CCTGCGCGCC
GAACCGCTGA CGGAACGGAA GGCGCAACTG GAGCGGCTGC TCGCCGGCCA CGACGGGCTC
GTGCGGTATT CGAAATCGCT GGGCGCGGAC GCAGAGCCAC TGCTGGCGCA GGCGCGAAAA
CTCGGGTTGG AAGGCCTGAT CGGCAAGCGG CCGGATGCAC GTTACGAAAC GGGCCAGCGC
AGCGGCGCGT GGATCAAACT GAAGCTGCAT CAGGAGCAGG AGTTCGTGAT CGGCGGCTAC
AGTCCGCCGG GCGGTTCGCG GCCGTATTTC GGTGCACTGC TCGTCGGAGT CCACGAGGGC
GCGGGGCTCA CGTTTGCCGG GAAGGTGGGG ACCGGATTCA ACGTAAAGCT GCTGCGCGAG
CTGCACGGCC GGTTTCAAAA AATCCGCACG GAGGCCTGTC CGTTCGTGAA CCTGCCCGAG
AAACGCCGCG GCCGCTATGG CGCGGGCGTC ACGGCGGCCG AGATGAAGCG CTGCACCTGG
GTGAAGCCGG AACTGGTGGC GCAGATCAAG TTTGCGGAGT GGACGCGCGA CGACCGGCTG
CGTCAGCCGG TGTTTCTCGG ACTGCGCGAA GACAAGCCCG CCCGCGAGGT GGTGCGCGAA
CGGAGTGATT GA
|
|---|
| Protein sequence | MSLKAYVKKR DFRKTAEPKG GRAPGGAGHR FVVQKHAASR LHYDFRLELG GTLKSWAVPK
GMPYAKGDKR LAVHVEDHPV SYIDFEGTIP QGQYGGGTVM VWDRGTFEPL SEAPLKELDG
GKLHFVLRGK KLKGEWYLVR LRGGDEWLLI KGGEDMKPVS AKADDTSVLS GKSMKQLSEG
KGRVWQSNRS EPKSFRASVA EAMHAAETKR RTKKETFANL EPRRPRRGRQ ASDAKASRDE
GVAAPAKAAH GRAADKSAGV KAEHGSERAR RPRAQGRASK LTPSFIEPMK ALLVDAPPPG
EWIYEIKFDG FRAMAFRDRK GVRLLSRNNK PFAAKFPEIV DAVAALDVKD AVIDGEIVAL
DDKGRSSFQL LQAYDLGQEH PPLFFYAFDL LQWNGRDLRA EPLTERKAQL ERLLAGHDGL
VRYSKSLGAD AEPLLAQARK LGLEGLIGKR PDARYETGQR SGAWIKLKLH QEQEFVIGGY
SPPGGSRPYF GALLVGVHEG AGLTFAGKVG TGFNVKLLRE LHGRFQKIRT EACPFVNLPE
KRRGRYGAGV TAAEMKRCTW VKPELVAQIK FAEWTRDDRL RQPVFLGLRE DKPAREVVRE
RSD
|
|---|
| |