| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4270 |
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| Symbol | |
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| ID | 6205258 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | + |
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| Start bp | 5526433 |
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| End bp | 5529030 |
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| Gene Length | 2598 bp |
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| Protein Length | 865 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641693938 |
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| Product | glycosy hydrolase family protein |
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| Protein accession | YP_001821143 |
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| Protein GI | 182416077 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
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| COG ID | [COG4225] Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins
[COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0354367 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGAT TTCTCCTGCC CTTCCTCTCG TTTTCCGCCG TCGTTGCTCT GTTTTCCCTT
CGCGCCGCCG AGCCCGCGCC ACGTCAGTTT GGCGACGCCA CTCCGCTCGA ATGGTCGAAG
CGAATGGCGC AATCGGAAAT GGCGCGCAAA GGCGACACGA TGTTTCACGG CGGCAGCCGC
GCCCGCGCGC GGTGGGACTA CACCACCTCG CTCTTCGGGC TCTCGCTGCT GAAACTCGCC
GATCGCACCG GCGACCGCAC CTTCGCGGAC TACGGCGCGC AAACCGCCGA GTCATTCATT
CGGCCGGACG GCTCCATCGC GACCTACGAG ATGGAGGACT ACAACATCGA CATGATTCCT
CCGGGGAAGG TCATGCTCCT CCGCTGGGAG CAGGGCGTGC GCGATGCGAA GTTCATGACC
GCGCTCGAGA CGCTGCGCGC GCAGATGCGG AAGCATCCGC GGACCAGTGA CGGCGGGTTC
TGGCACAAGC AGCGTTATCC CTACCAGATG TGGCTCGACG GTCTGTTCAT GGCGTCGCCG
TTCCTGGCCC ACTACGCCAA AGTCTTCGAG GAGCCCGAGC TCTTCGACGA GGTGGCGAAA
CAAATCCTGC TGATGGACCA GCATGCCTGC GATCCGAAGA CCGGGCTGCA CTACCACGCG
TGGGACGAAA AGCGCGCGCA ACCGTGGGCG AACAAGGAAA CGGGCCACTC CCCGAATTTC
TGGGGCCGCG CCGAAGGCTG GTACGCGATG GCGCTGGTCG ACTCGCTCGA CTTCTTTTCG
CCCACACATC CGGACGTGGA AAAAATCAAC GAGGTGCTGC GTCGCGTGGC CGACGGCGTC
GTCCGCTGGC AGGATCCGAA GACCGGGCTC TGGTGGCAGG TGATGGACCA GGGTAACCGC
GAGGGGAACT ACCTCGAGGC GACCGCCTCC AGCATGTTCG TCTACTCGCT CGCGAAGGCG
ATCAACCGCG GTTATCTGCC GCGCGAGAAA TACCTGCCCG CCGTCCTCAA GGGCTACGAG
GGCATCATTC GCGACCTCAT CCGCCGCGAC CCGGACGGCA AGATCAACCT CACGCGCTGT
TGCGCCGTCG CCGGGCTCGG CTACACCACG TCGACGGGTC GGCCGCGCGA TGGCAGCTTC
GAGTATTACA TCAGCGAGCC GATCATCGAC AATGACCTCA AGGGGGTCGG CCCCTTCATC
CTCGCCGGGC TCGAGCTCGA CCAACTGCTC GCCGATGCAA GTGGCCCGGC GCGTGAGCGC
AAGGATCTCG GCGCCCGCGG CTGGTCGGAC TACGAGGCCG TGCTCGCGCG GATCCAGCCG
CCGACGTTTC CCGATCGTGA TTTTCCCATC ACTGATTTCG GCGCGAAGCC CGACGCCGAC
TGCACCGACG CGATCCGCGC GGCGATCGAC GCCTGCCACC AGGCCGGCGG CGGCCGTGTT
GTCGTGCCCG CGGGCGAATG GCTGACCGGC GCGATTCACC TCCGGAGCAA CGTCAACCTC
CACGTCGCGA AAGGCGCCAC GCTCCGCTGG GTTTTCGACC TCGCCAAATA CCCGATCGTC
TTCACCCGCT GGGAAGGCGT CGAGTGCATG AACTTCTCTC CATTCATCTA CGCGTGGGAG
CAAGAGAACA TCGCCATCAC CGGCGAGGGC ACGCTGGATG GCGGCTCCGA TTGGAGCACC
TGGTGGGGCT GGAACGACAA GCGCGACGGC ACGGCGCCGA AACAGCGCGC CGCCCGCAAC
CGGCTGATCC AGATGGGCGA AACCAACGTA CCCGTCGCCG AACGCGTCTT CGGTGCGAAC
GACTTCCTGC GGCCGAATTT CGTGCAGCCC TACCGCTGCA AGAACATCCT CATCGAGGGC
GTCAGCATCA TCCGATCGCC GATGTGGGAA CTGCATCCGG TGCTCTCGCA GAACATCACC
GTGCGCAACG TGAAGATCAC TTCGCACGGA CCGAACAACG ACGGCTTCGA TCCCGAATCC
TGCCGCGACA TTCTGGTCGA GGACACGCTG TTCGACACCG GCGACGATTG CATCGCGATC
AAGTCCGGCC GCAACGGCGA CGGGCGGCGC GTGAACGTCC CGACCGAGAA CATGGTCATC
CGCCGCTGCG TGATGAAGGA CGGCCACGGC GGCGTGGTGC TCGGCAGCGA ATGCACCGGC
GGCATCCGCA ACATCTTCGT CGAGGATTGC GAGATGGACA GCCCGGACCT TGACCGCGGG
TTGCGCTTCA AGAACAACGC GGTCCGCGGC GGCGTGCTCG AGAATGTTTT CATGCGCAAC
GTGAAGATCG GCCGCGTGGG CGAGGCCGTC CTGACCATCG ACCTGCTGTA CGAGGAGGGC
GCGAAGGGCG CGTTCAAACC GATCGTCCGC AACGTGCAGA TGGAAAACAT CACCAGCTCG
GCCAGCCCGC GCGTCATGTA CATCCGCGGT TTCCCCGGCG CGGTGATCGA AGACATTCGC
ATCAGCAACT CGACATTCAA CAGTGTGACC GAAACCGAGG TCGTGCAGCA CGCCGGAACC
ATCACGTTGA AGAACGTCAC GATCACCCCT GCCAAGGGCA CCCGCAGCCT CAACTCCGTC
CCCGCTCCTC AGAAATAA
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| Protein sequence | MKRFLLPFLS FSAVVALFSL RAAEPAPRQF GDATPLEWSK RMAQSEMARK GDTMFHGGSR
ARARWDYTTS LFGLSLLKLA DRTGDRTFAD YGAQTAESFI RPDGSIATYE MEDYNIDMIP
PGKVMLLRWE QGVRDAKFMT ALETLRAQMR KHPRTSDGGF WHKQRYPYQM WLDGLFMASP
FLAHYAKVFE EPELFDEVAK QILLMDQHAC DPKTGLHYHA WDEKRAQPWA NKETGHSPNF
WGRAEGWYAM ALVDSLDFFS PTHPDVEKIN EVLRRVADGV VRWQDPKTGL WWQVMDQGNR
EGNYLEATAS SMFVYSLAKA INRGYLPREK YLPAVLKGYE GIIRDLIRRD PDGKINLTRC
CAVAGLGYTT STGRPRDGSF EYYISEPIID NDLKGVGPFI LAGLELDQLL ADASGPARER
KDLGARGWSD YEAVLARIQP PTFPDRDFPI TDFGAKPDAD CTDAIRAAID ACHQAGGGRV
VVPAGEWLTG AIHLRSNVNL HVAKGATLRW VFDLAKYPIV FTRWEGVECM NFSPFIYAWE
QENIAITGEG TLDGGSDWST WWGWNDKRDG TAPKQRAARN RLIQMGETNV PVAERVFGAN
DFLRPNFVQP YRCKNILIEG VSIIRSPMWE LHPVLSQNIT VRNVKITSHG PNNDGFDPES
CRDILVEDTL FDTGDDCIAI KSGRNGDGRR VNVPTENMVI RRCVMKDGHG GVVLGSECTG
GIRNIFVEDC EMDSPDLDRG LRFKNNAVRG GVLENVFMRN VKIGRVGEAV LTIDLLYEEG
AKGAFKPIVR NVQMENITSS ASPRVMYIRG FPGAVIEDIR ISNSTFNSVT ETEVVQHAGT
ITLKNVTITP AKGTRSLNSV PAPQK
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