| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4246 |
|---|
| Symbol | |
|---|
| ID | 6208057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 5480525 |
|---|
| End bp | 5484367 |
|---|
| Gene Length | 3843 bp |
|---|
| Protein Length | 1280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641693914 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_001821119 |
|---|
| Protein GI | 182416053 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.921248 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.11404 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGTCCCG CCCCGAAACC CGTGCTGCTG CTCCACTGCG CGCTGCTGTA TGCAGCTGCC
CTGATCGGCG TCACGATCAC GAGCAGCGCG GCAGAGGAGG GCCGGCCCAT TCTTCGCTCA
TTCGGCACGC GGGAGGTAGG CAGCGGCTAC ACCCTGCATT GGAGCGCCAC CGAAGACGAA
CGCGGCGTCA TGTATTTTGG CTCCGACGTG GTGAGCACGT TCGATGGGGA ACGATGGAAA
CACTACCCGG TTCCCGGCGG CACCGTGGTG CGATCGCTTG CGGTCGGCAG CGATGGCCGC
GTGTGGGTCG CCGCATTGAA CCAAATCGGT TATTTCGAGC GGCTGCCCAA CGGGGATCTC
GGCGCGTACC GGTCATTGTT GGCCCAGCTC CCGACCGCGA ATCGGGAACT CGGCGACGTC
TGGCACGTAT TCGCCCATCC GGCCGGAGCG GTGTTCGTCA CGTCCAATAC CGTGCTGATC
TGGGATGGCA CTTCCTTCCA CGTCAGCACC ATGCCGGGTG AACGGCGGCT TCCTGCTTTT
CAAGTAGGCC GTCGGATCTT CGTTTCGCAT CGTTCCTCTG GAATCTGGGA GGTGGAAGGG
CAGGCGCTCC GGCGAGGCGT TTCGCCGGAG GAATTGGGGA ATACCACGGC ACTCTGGCTC
GAGCCCCGCA ACAACGGCTG GTTCGTCGTG AGCCCCGCTG GACTGTTTGA ACTTCACGCG
GGAGTTCGGA CCGAGGTGTC GGAGGAGCTT TCTGCTTTTG TGCGCCAAAA CATCGTCACC
AGCGTGTGCC GGCTTTCCAC GGGAGAACTC TGCATCGCGA CGTTAGGTGG CGTCGGCGTG
CTAAGTGCGA ATGATCAAAC GACCTCGATT CTCACGTCAA AAGAAGGACT GCCGTCTTCG
GCGGTACTTT CGCTTTTTGG CGCTCGGGAC GGAGCTTTGT GGATTACATC CAGTCTGGGC
ATCACGCGTG CCACCATTGG CAGCGGCACG AGTATTTTCG ATGAGGAGAA CGGCCTGACC
TCGCGGCCCT GCAACGGAAT CGTGCAAACC GGTTCGCGCC TGTTTGTTTC GACGGACAAC
GGCGTGTTCA GCCTGCCATT GGGACTTGGG GCTGAAAACG CGTTTCAGTT GGAACCGGAA
ATGGCGGCAC GCTTCGTCGA TCTCGCCCCC GCCGAGCATG GGTTCTATGC CGCAGGATAC
CGCGGTGTCT ATTGGATGGG AGACGGCGGA CTCGTCGAAT CCTTCCGCAC CAAGGTCGAG
CCGATCCTGC TCCAGCGATC ACAACGGCTC AACGAATTCC TGCTCGCCGA CAACCTCGAT
CTTTACCGCC TGACCGAGGA AACGCCAGGT CGCCTCCGAG CGCAAGCGGT CGGACGACTG
CCGGATTTGC CGGTCGCGAT CGTGGACGAC GACGACCGAA AGTTCTGGGT GGGGACCGGC
TCCCGTGGCG TGTTCGTGGT GGACGCGCAG GCTGAAACCA CGCGGCTGTC ACCGGTCGGC
GGTGGTGACT CGACCAATCC CGGGCCGGTG CTGGTGGCAC GGATCGGATC GGCTATCGCG
GTCTGCGGCG ACGGCGCGAC TCGGCTTTAT CCGCGCGGAA AATCCGTCCC TGTCCGCGTG
GCCGCGATGC CGACGACGGC CGCGTTCGCC ATGTCCAACG AGGGACCGCC CGGCCAGATC
TGGATCGCTT TCGCCAGCCC GTTTCCCGAC GGCACCACCT CGCCTCTCCT CGGCCGGCTG
ACCCTCGCCG GCGAAACCGC CCGCTGGCAA CCCTTCAGCA TTCCGGGGCT GGAGCGCGTG
GGTACGATCA ATCGGCTCTT CGTCGACCAG CGGGGCATTC TCTGGGTCGG CGGCACGGAC
GCGCTGCTGC GGATCGATCC GGCCCAGCTG AAACCCACCG CCCCGCCGCG GATCCCGCTG
CTGCGCGGCA GCGTGCCGGA GTTCGCCGAG GTGCCGCCGG ACCAGAATAC GCTCACCGTG
CAATTCAGCG CCGTCGAATA CGGCCGGCGC GAAACACTGC GGTTTCAAAC CCGGCTCTCC
GGCAACGCAG ACTGGTCGGC GCCGACGGAT AACAGCCATC TGACGCTCGC CGGGCTGCGC
GACGGCACCT ACGAGTTTGC CGTTCGCGTC ATCAACGACG CCGGCATGAC CAGCCCCGCC
GCCACCTGGC ATTTCACCGT GCTGCCCCCG TGGTACCGGA CGCGGCTGGC GTTCGCACTC
TGGACCGTTC TGGCCATTGC GGGGTTCACC GGCGGGATCC ACTGGCGCTC GGCGTATCTC
CGCCACCAAA ACCTCCGGCT CGAGGCGTTG GTGCGGAAAA AAACCGAGCA GCTCGAGCAG
GCCAACAACG CCAAATCGGA ATTTCTCGCG AACATGAGCC ACGAGATCCG CAACCCGATC
TCTGGCATCG TGGGGCTGTC GCTGGCCATC GAGGAGACGC CGCTGAGCGA GCGCCAGCGG
CAGATCGCCG ACTCGATCCG CAGTTGCGCC TCGCTGCTTG CCACGCTCGT CGACGACGTG
CTCGATTTTT CCAAGATCGA GGCCGGCAAG ATCGAGTTGC GGCTCGCGCC GTTCGAGCTG
CGCGCCGCGT TGGAACAGTG CGCTGCGATG GTGGCCGAGG AGGCCCGCGC CACCCACACG
CCGATCGAGA TTTCCTTGCC GCCGGAGCTT CCCGCCAGCC TGATCGGCGA CTCCGCCCGC
GTGCAGCAGA TCGTGCTGAA TTTTCTCACC AACGCGGTGA AGTTCGGCCC CGGCAAACCC
ATTCAGATCG GCGCCACCGC GGTGCCAGGC GGACGCATCC GGCTGTTCGT CCGCGATCAC
GGGCCCGGCA TGAGCGCGGC CGAGACAACC ACGCTGTTCA CCAAATTCAC CCGACTCGAT
CGCGCGCGCT CCCAAAACAT CCGCGGCTCC GGTCTCGGCC TCGCCGTGTG CCGACTGTTG
GCCACGAAAA TGGGCGGCAA CGTCGGCGTC GAATCGCAGC TCGGCCAGGG TTCCTGCTTC
TGGGCCGAGC TCCCTTTGCC GTCGTCCGCG CCGCCGCCCG AGTCGGTCGG CGTGGCCGCG
CCGACCGCGT CGCCTTTGCA CGCGTTAATC GTGGAGGACA TCGACTACAA CGCCGCCGCG
ATGCAGGCCG TGCTGCGCAA GATCGGCATC ACCTCCGACG TTGCCTCCGA CGGACTCTCC
GCGCTGCGCA AACTCCAAAG CGATCGCTAC GATGTCGCGT TCATGGACTG GAACCTGCCC
GGCATGATCG GCACGGAAGT CGTCGCGCGC TACCGCGCCG TCGAGCCGCC CGACCGGCAC
ACGATCATCA TCGCGACCAC GGCGTATTCC GGGACGTTCA ACCAGGAGGC GTGCCTCAAG
GCCGGCATGG ACGCGTTCGT GTCGAAGCCG TTCACTCCCG AAAAAATCGC GGCGGCGCTG
CACGATCTGC GCGGGCCACT CCGCGCCGCG GCTTCGGTCG AGGTGAGCCG CCGGCTCGAC
GCGCCGGCCC CGCCGCCGGA AATCGACCTC CAGCTGCTCA AGTTGCTCGG CGAGGACAGC
GAAGGCGGCG TGCCCGCGCA GATCGACCGC TATCTCGCTG CCTTTACGGC CGAGCGGGAT
GCCACCGACG CCGCTGTTCG CCGCGGCGAC GCGAAGGAAA TCCATCGCGC CGCGCACCGG
ATGATCTCGC ACGCGACAAT GGTGAAATAT GAACCGCTCG CGCAGCTCGC CTCCCAACTG
CAGGCCTACG CCGCCACGGC GGAGCCCGAC CGGTTAACCC GCCTGCTGGC CGAGTTCGAC
GCCGAGTTTG CGCGTTTCAG GAGTAAACTG GATTCGATCC GTGCTTCGCT GGCACCTGCG
TGA
|
|---|
| Protein sequence | MRPAPKPVLL LHCALLYAAA LIGVTITSSA AEEGRPILRS FGTREVGSGY TLHWSATEDE
RGVMYFGSDV VSTFDGERWK HYPVPGGTVV RSLAVGSDGR VWVAALNQIG YFERLPNGDL
GAYRSLLAQL PTANRELGDV WHVFAHPAGA VFVTSNTVLI WDGTSFHVST MPGERRLPAF
QVGRRIFVSH RSSGIWEVEG QALRRGVSPE ELGNTTALWL EPRNNGWFVV SPAGLFELHA
GVRTEVSEEL SAFVRQNIVT SVCRLSTGEL CIATLGGVGV LSANDQTTSI LTSKEGLPSS
AVLSLFGARD GALWITSSLG ITRATIGSGT SIFDEENGLT SRPCNGIVQT GSRLFVSTDN
GVFSLPLGLG AENAFQLEPE MAARFVDLAP AEHGFYAAGY RGVYWMGDGG LVESFRTKVE
PILLQRSQRL NEFLLADNLD LYRLTEETPG RLRAQAVGRL PDLPVAIVDD DDRKFWVGTG
SRGVFVVDAQ AETTRLSPVG GGDSTNPGPV LVARIGSAIA VCGDGATRLY PRGKSVPVRV
AAMPTTAAFA MSNEGPPGQI WIAFASPFPD GTTSPLLGRL TLAGETARWQ PFSIPGLERV
GTINRLFVDQ RGILWVGGTD ALLRIDPAQL KPTAPPRIPL LRGSVPEFAE VPPDQNTLTV
QFSAVEYGRR ETLRFQTRLS GNADWSAPTD NSHLTLAGLR DGTYEFAVRV INDAGMTSPA
ATWHFTVLPP WYRTRLAFAL WTVLAIAGFT GGIHWRSAYL RHQNLRLEAL VRKKTEQLEQ
ANNAKSEFLA NMSHEIRNPI SGIVGLSLAI EETPLSERQR QIADSIRSCA SLLATLVDDV
LDFSKIEAGK IELRLAPFEL RAALEQCAAM VAEEARATHT PIEISLPPEL PASLIGDSAR
VQQIVLNFLT NAVKFGPGKP IQIGATAVPG GRIRLFVRDH GPGMSAAETT TLFTKFTRLD
RARSQNIRGS GLGLAVCRLL ATKMGGNVGV ESQLGQGSCF WAELPLPSSA PPPESVGVAA
PTASPLHALI VEDIDYNAAA MQAVLRKIGI TSDVASDGLS ALRKLQSDRY DVAFMDWNLP
GMIGTEVVAR YRAVEPPDRH TIIIATTAYS GTFNQEACLK AGMDAFVSKP FTPEKIAAAL
HDLRGPLRAA ASVEVSRRLD APAPPPEIDL QLLKLLGEDS EGGVPAQIDR YLAAFTAERD
ATDAAVRRGD AKEIHRAAHR MISHATMVKY EPLAQLASQL QAYAATAEPD RLTRLLAEFD
AEFARFRSKL DSIRASLAPA
|
|---|
| |