| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4152 |
|---|
| Symbol | |
|---|
| ID | 6208207 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 5368612 |
|---|
| End bp | 5369157 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641693821 |
|---|
| Product | ribosome recycling factor |
|---|
| Protein accession | YP_001821026 |
|---|
| Protein GI | 182415960 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0233] Ribosome recycling factor |
|---|
| TIGRFAM ID | [TIGR00496] ribosome recycling factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0904163 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.106363 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCATC CGATCCTCGT CGATGCCCAG GCCAAGATGA AAAAAGCCGT GGACCACACG
TTGCACGAAT TCAGTGCGAT CCACACCGGC AAGGCCACGC CGGCCATGGT CGAGGGCGTG
ATGCTCGAGG CTTACGGGTC GCAGATGCGG TTGAAGGATT GCGCCGCGAT TTCCACGCCC
GATGCGCGGC TGATCCAGAT CCAGCCGTGG GATGCGAGCC TCGTGAAGGC GATCGTGAAG
GGCATTCAGG AAGCGAACCT CGGCTTCAAT CCCATTCCTG ACAGCAAAGT GGTGCGCGTA
CCATTGCCCG AGATGAGCCG CGAACGGCGG CAGGAGTTCG TCAAGAACGC GCACCGACTC
GCCGAGGAAG GCCGCGTCCA CGTGCGCAAC GTCCGCCGCG ACGTCCTCGA AGGACTCAAG
AAAGCCAAGC TGCCCGAAGA CGAATCCAAG CGACTCGAGA AGGACATCCA GACCGCCACC
GACGCGTCGA TCAAGGCCAT CAACGACGCG CTCGCCCACA AGGAGAAGGA CCTTCTGACG
GTGTAG
|
|---|
| Protein sequence | MSHPILVDAQ AKMKKAVDHT LHEFSAIHTG KATPAMVEGV MLEAYGSQMR LKDCAAISTP
DARLIQIQPW DASLVKAIVK GIQEANLGFN PIPDSKVVRV PLPEMSRERR QEFVKNAHRL
AEEGRVHVRN VRRDVLEGLK KAKLPEDESK RLEKDIQTAT DASIKAINDA LAHKEKDLLT
V
|
|---|
| |