| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4055 |
|---|
| Symbol | |
|---|
| ID | 6204688 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 5258871 |
|---|
| End bp | 5259515 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641693723 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001820929 |
|---|
| Protein GI | 182415863 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0468] RecA/RadA recombinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.328373 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCGTC CCGTCGCCAA ACTCTCGTCG CTGCGCCAGC TCCTCTCGGA GCGGTTTCCT
CGCGCCGCGC GCGGCGACAC GCGCACGCTG CCGACGGGTG TGCCGGCGAT TGACGACGGC
GTGGGCGGGC TGCCGTGCGG CGCGGTGACG GAGATCGTGT GCGCGGCGCC GAGCTGCGGC
AGTCAGCTTT TGCTGGGTGA ACTGTTGCGG GTGACGCGTC ATGAGCGTGG CCGCGTGGCG
CTGGTCGACG GCCACGACAG CTTCGATCCG GCATCGTGGC CGGGCGAATG GCTGCAGCAT
CTGGTGTGGG TGCGCTGTTG CGACACGGCG ATGGCGCTGC ATGCGGCGGA TATCCTCACG
CGCGACGCAA ACCTGCAACT CGTGGTGATC GATCTGCGGC TTGCGCCACT GGCGGAGCTG
AAACGCACGC CGGCGCAGTT CTGGTATCGG CTGCAGCGCT CGACCGAGCC GTCGGACCTC
GCGCTGGCAG TGTTCACGCC GCAGGCGACC GTGCCCAGCG CGCGGCTGCG ATTGGAGTTG
GCGCAGTCGC ATGATTTCAC CGCCTTGAGC AGCGACCGGC TGCAACTCGC CGCCGCGCTG
ACGCCGGCGG TGCAACGGCA ACGACAGATC GCAGCGAGCG GGTGA
|
|---|
| Protein sequence | MSRPVAKLSS LRQLLSERFP RAARGDTRTL PTGVPAIDDG VGGLPCGAVT EIVCAAPSCG
SQLLLGELLR VTRHERGRVA LVDGHDSFDP ASWPGEWLQH LVWVRCCDTA MALHAADILT
RDANLQLVVI DLRLAPLAEL KRTPAQFWYR LQRSTEPSDL ALAVFTPQAT VPSARLRLEL
AQSHDFTALS SDRLQLAAAL TPAVQRQRQI AASG
|
|---|
| |