| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4027 |
|---|
| Symbol | |
|---|
| ID | 6205008 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 5223593 |
|---|
| End bp | 5224858 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641693695 |
|---|
| Product | glycine hydroxymethyltransferase |
|---|
| Protein accession | YP_001820901 |
|---|
| Protein GI | 182415835 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0112] Glycine/serine hydroxymethyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.17117 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0123375 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAACG CCTCGCCGCT CCAAACCTTG GATCCTCAAG TCTTCTCGGC CATCTCCGAG
GAACTCGCCC GCCAGCAGAG CCACATCGAG CTCATCGCGT CGGAGAATTT CACCTATCCG
GCGGTGATGG AGGCGCAAGG CAGCGTGCTC ACGAACAAAT ACGCCGAGGG TTATCCCGCC
AAGCGCTGGT ATGGCGGCTG CGAATTCGTG GACAAGGTCG AGGTGCTCGC GATCGAACGC
GCGAAGAAGC TTTTCGGCGC CGAGCACGCC AACGTGCAGC CGCACTCCGG CGCGCAGGCC
AACACCGCCG TTTACGCCGC GGTGCTGCAG CCTGGCGACA AGGTGCTCGG CATGAACCTG
AGCCACGGCG GCCACCTCAC TCACGGCAAC CCGGCCAACT TTTCGGGCAA GCTCTATCAA
TTCTGCCAGT ATGGCGTCCG CGAGGACAAC GGGCTGATCG ATTACGACGA ACTCGCCGCC
ACCGCGGACC GCGAGAAGCC CAAGATGATC ACCGTCGGCG CCAGCGCCTA CTCGCGGATC
ATCGACTTCG CCCGCATGGG CGAGATCGCG CGCGGCGTCG GCGCGTATCT CTTCGCCGAC
ATCGCGCACA TCGCAGGGCT CGTCGCGGCC GGCGCGCACC CCTCGCCCGT GCCGCACGCC
GACTTCGTCA GCACCACCAC GCACAAGACC CTGCGCGGCC CGCGCGGCGG CTTGGTTCTG
TGCAAGGCCG CGCACGCGAA GGCGCTCGAC TCCGCGGTCT TCCCCGGCAC GCAGGGCGGC
CCGCTGATGC ACATCATCGC GGCCAAGGCC GTCTGCTTCG GCGAGTGCCT GAAACCCGAG
TTCAAGGCCT ACTCCGAACA GATCGTCAAA AACTCCAAGG CGCTCGCGGC GGCCTTCCTC
TCGCGCGGCT ACAAGATCGT GTCCGGCGGC ACCGACAATC ACCTCTTCCT CGTCGATCTG
CGCACGAAGT ATCCGGAACT CACCGCCAAG AAGGCGCAGG AGACGCTCGA TCTCGCCAAC
ATCACGTGCA ACAAGAACAC CGTGCCGTTC GAAACCCGCT CGCCCTTCCA GGCCTCCGGC
ATCCGGCTCG GCACGCCCGC GGTCACCACG CGCGGCTTCC GCGAAGCCCA CATGGCCGAC
ATCGCCGACT GCATTGACAG CGTGCTGGCG GCCATCGGCA CCGAACGTGA GGCCGTGGTC
GTAGCCGCGA CCAAGAAGCG GGTCACGACG CTGACCTCGC GTTTCCCGTT GCCGTACCAG
CTGTAA
|
|---|
| Protein sequence | MLNASPLQTL DPQVFSAISE ELARQQSHIE LIASENFTYP AVMEAQGSVL TNKYAEGYPA
KRWYGGCEFV DKVEVLAIER AKKLFGAEHA NVQPHSGAQA NTAVYAAVLQ PGDKVLGMNL
SHGGHLTHGN PANFSGKLYQ FCQYGVREDN GLIDYDELAA TADREKPKMI TVGASAYSRI
IDFARMGEIA RGVGAYLFAD IAHIAGLVAA GAHPSPVPHA DFVSTTTHKT LRGPRGGLVL
CKAAHAKALD SAVFPGTQGG PLMHIIAAKA VCFGECLKPE FKAYSEQIVK NSKALAAAFL
SRGYKIVSGG TDNHLFLVDL RTKYPELTAK KAQETLDLAN ITCNKNTVPF ETRSPFQASG
IRLGTPAVTT RGFREAHMAD IADCIDSVLA AIGTEREAVV VAATKKRVTT LTSRFPLPYQ
L
|
|---|
| |