| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3896 |
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| Symbol | |
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| ID | 6205834 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | + |
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| Start bp | 5057175 |
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| End bp | 5057993 |
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| Gene Length | 819 bp |
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| Protein Length | 272 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641693564 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_001820770 |
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| Protein GI | 182415704 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00579021 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.195582 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCAGG GCGCCGCCGG CAACCCGACC GTCGCCATGA TCCAGGCAGC ATTTACGCAC
CACCAGCTGC CGTGGCGTTA CATCAATCTC GAGGTCGCGC CTGCTGACCT GCCCGCCGCG
GTCCACGGCG CTTTGGCGAT GGGCTTTCGC GGCTTCAATC TCTCGATGCC GCACAAGGTC
GCGGTCATCC CGCTCCTCGC TGGACTTGGC GAGTCGGCCA AGCTGATTGG GGCGGTCAAC
TGCGTCGTGC GCCGCGACGG CGCGTTCGTC GGCGAGAACA CGGACGGGAA GGGTTTTCTC
ACGTCGCTCC AGACGGTGAT CGATCCGCGC GGGACCAACG TGGTGCTGTT CGGCGCCGGC
GGAGCGGCGC GCGCGATTGC GATCGAGCTC GCGCTCGCCG GGATTCGCCA CCTTACGATC
GTCAACCGCG CAATGGATCG CGGCCGCGGC CTGGTCGACG CGTTGCGCGC GGGCACGCCC
ACCGAGGTGA CTTTCGTGCC GTGGAGCGGC AACTATGTTG TGCCCTCCGA CACTCAGGTC
CTCATCAATG CGACCTCGAT CGGCCTCTAC GCGCCCGAGG CCCGCGTGCC GGTCGCGGTG
GAATCACTCC GGCCCGAGAT GGTGGTGGCT GACGTGGTCT TCAACCCGCC CAACACCCGG
TTCCTGGACG AGGCCGCCGC GCGCGGCTGC ACCACGCTCG ACGGACTGGG CATGCTGGTG
AACCAAGGCG TGATCGGCGT CTCGTACTGG ACCGGTGTCA CCCCCGACGC TGCGGTGATG
CGCCGCGCGC TGGAGCAGGC GCTCGGATTG GCGCGCTGA
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| Protein sequence | MSQGAAGNPT VAMIQAAFTH HQLPWRYINL EVAPADLPAA VHGALAMGFR GFNLSMPHKV
AVIPLLAGLG ESAKLIGAVN CVVRRDGAFV GENTDGKGFL TSLQTVIDPR GTNVVLFGAG
GAARAIAIEL ALAGIRHLTI VNRAMDRGRG LVDALRAGTP TEVTFVPWSG NYVVPSDTQV
LINATSIGLY APEARVPVAV ESLRPEMVVA DVVFNPPNTR FLDEAAARGC TTLDGLGMLV
NQGVIGVSYW TGVTPDAAVM RRALEQALGL AR
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